PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco002571.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | AP2 | ||||||||
Protein Properties | Length: 414aa MW: 45095.2 Da PI: 6.7974 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.9 | 4.4e-12 | 164 | 219 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++gr++A+++d ++ g krk + g ++ +e+Aa+a++ a++k++g Aco002571.1 164 AYRGVTRHRWTGRYEAHLWDnTCQrEGqKRKGRQ-GGYDKEEKAARAYDLAALKYWG 219 69******************88776556667777.669999**************98 PP | |||||||
2 | AP2 | 48.5 | 2.2e-15 | 262 | 313 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Aco002571.1 262 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDVAAIKFRG 313 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.55E-15 | 163 | 229 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.47E-18 | 163 | 228 | No hit | No description |
PROSITE profile | PS51032 | 17.873 | 164 | 227 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-8 | 164 | 219 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-13 | 164 | 228 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-21 | 164 | 233 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 165 | 176 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.70E-12 | 262 | 323 | No hit | No description |
Pfam | PF00847 | 1.5E-10 | 262 | 313 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-18 | 262 | 323 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.282 | 263 | 321 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-19 | 263 | 321 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-34 | 263 | 327 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 303 | 323 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MAPPNTWISF SLPPIEMLLT PYASAYASDP IVPSSHHDAA SYQFLSQAMK LEDTAAAHGS 60 PPLDPCIETL ADAHDSSASF TGATDRRGYE VPYPFLLASA SSEMAEEPSS VIGGAASASA 120 GYSPESGREI TVPSYPPPPP PMLAAAQPRS ERSAAVGSCK RTSAYRGVTR HRWTGRYEAH 180 LWDNTCQREG QKRKGRQGGY DKEEKAARAY DLAALKYWGP TAATNFPVEN YSNEIENMKD 240 MTKQEFIASL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFATEEEA 300 AEAYDVAAIK FRGVNAVTNF EISNYDVEAI ASTDLPIGAS TKRTKLAPKE DDQLASFSLI 360 HHHPNSTPFG PIHQHPDLIP VGFFPNLFQL RASCPLSSLA YYTVGEPNLD LHS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020085662.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-109 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A199VJL5 | 0.0 | A0A199VJL5_ANACO; AP2-like ethylene-responsive transcription factor AIL5 | ||||
STRING | XP_008781163.1 | 1e-139 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 7e-94 | AINTEGUMENTA-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Aco002571.1 |
Publications ? help Back to Top | |||
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