PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco002440.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 491aa MW: 52340.2 Da PI: 8.946

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco002440.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Aco002440.1 76 FVCEICHKGFQRDQNLQLHRRGH 98 89*******************88 PP
2	zf-C2H2	11.3	0.0011	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Aco002440.1 157 WKCDKCSKKYAVQSDWKAHSKIC 179 58*****************9876 PP
3	zf-C2H2	11.6	0.00084	187	205	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Aco002440.1 187 DCGTVFSRRDSFITHRAFC 205 9**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.3E-5	75	98	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.91E-6	75	98	No hit	No description
PROSITE profile	PS50157	10.637	76	98	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.046	76	98	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2
SMART	SM00355	240	122	152	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.2E-4	145	178	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.91E-6	152	177	No hit	No description
SMART	SM00355	150	157	177	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MSNISGDGGS FHSGKNTGED EGHHHHPLLH QSSAIGPEAN PPPPAAKKKR SLPGTPDPNA 60 EVIALSPRTL MATNRFVCEI CHKGFQRDQN LQLHRRGHNL PWKLRQRASG GDAAEAARKK 120 VYVCPEPTCV HHEASRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG 180 TREYKCDCGT VFSRRDSFIT HRAFCDALGQ ESNKLNQPMM AHSNLQGPAH VLLSAGNAPV 240 TTSVGLADFT DDAKDPQLKP FSDETALTSP RPLGMAGCML SSFGPSSLHL KGTIGPLGLD 300 GLGDANIGQV AAGSSGHMSA TALLQKAAQM GAAPVSNNVS SAMMHRGVVS MMAGPDRFSG 360 TRPCGPIKAH GLYNEIRLQG QQDHLAELGM NQHYSAPMND LSAFSRPIPY LLGGSGGSGS 420 GSGGGGGRGG DVRMVDYLGV GPQRSPHEQH NPQQHVGLQG VIPHQRLQSL GPFQEMTHGL 480 ISLEKPIWDV *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MSNISGDGGS FHSGKNTGED EGHHHHPLLH QSSAIGPEAN PPPPAAKKKR SLPGTPDPNA  60
EVIALSPRTL MATNRFVCEI CHKGFQRDQN LQLHRRGHNL PWKLRQRASG GDAAEAARKK  120
VYVCPEPTCV HHEASRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG  180
TREYKCDCGT VFSRRDSFIT HRAFCDALGQ ESNKLNQPMM AHSNLQGPAH VLLSAGNAPV  240
TTSVGLADFT DDAKDPQLKP FSDETALTSP RPLGMAGCML SSFGPSSLHL KGTIGPLGLD  300
GLGDANIGQV AAGSSGHMSA TALLQKAAQM GAAPVSNNVS SAMMHRGVVS MMAGPDRFSG  360
TRPCGPIKAH GLYNEIRLQG QQDHLAELGM NQHYSAPMND LSAFSRPIPY LLGGSGGSGS  420
GSGGGGGRGG DVRMVDYLGV GPQRSPHEQH NPQQHVGLQG VIPHQRLQSL GPFQEMTHGL  480
ISLEKPIWDV *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-34	153	216	3	66	Zinc finger protein JACKDAW
5b3h_F	9e-34	153	216	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020086123.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-106	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A199W2W0	0.0	A0A199W2W0_ANACO; Protein indeterminate-domain 2
STRING	XP_008789952.1	1e-168	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	4e-94	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Aco002440.1

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]