PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002426.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 447aa    MW: 47498.1 Da    PI: 8.3518
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002426.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.5e-104468327
                 S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  + C f+ rtGtC yG+rC+++H++
  Aco002426.1 44 APDCAFYIRTGTCGYGERCRYNHPR 68
                 589********************96 PP
2zf-CCCH22.91.5e-07951111127
                  GTS--TTTTT-SS-SSS CS
      zf-CCCH  11 rtGtCkyGdrCkFaHgp 27 
                  +tGtCkyG++Ck+ H++
  Aco002426.1  95 ETGTCKYGSTCKYDHPR 111
                  79*************96 PP
3zf-CCCH406.6e-13140164327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C+++++tG+Ck+G++CkF H++
  Aco002426.1 140 EKECSYYMKTGQCKFGSTCKFDHPQ 164
                  689********************97 PP
4zf-CCCH406.7e-13296321126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C++++rtG CkyG++Ck++H+
  Aco002426.1 296 PGQPECQYYMRTGDCKYGATCKYHHP 321
                  5789*********************8 PP
5zf-CCCH31.92.3e-10345367426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   lC ++a+ G+Ck+G++Ck+ H+
  Aco002426.1 345 QLCTYYAQHGFCKFGPTCKYDHP 367
                  69********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3424169IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-54168IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-74468IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-64669IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-44768IPR000571Zinc finger, CCCH-type
SMARTSM003560.08488111IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-595111IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.74795112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765137165IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-6137164IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10140164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6140165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5143163IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6295322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511295323IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10297321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5299322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4301321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056341369IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-6341368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6343370IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-8345367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4345366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MYGRSKVPEE GSGRDPDTGI EESMWRLGLG GGGGEFQLPE RPGAPDCAFY IRTGTCGYGE  60
RCRYNHPRNR GGPLVGAGRT AAMEYPERSG QPVCETGTCK YGSTCKYDHP RQAAGLAQPV  120
MLNYYGYPLR PVGNTLLNGE KECSYYMKTG QCKFGSTCKF DHPQPGAPSV PSPAPAFYST  180
VQPSSVPSTH QYPTLASWQV GRPPMVPAGS YMSGSYGPML VSPGVVPMQA WSPYPAPINP  240
VVTPGGQQVV QAGPGYNLSH QVSSPMPAYA SSYAPEASSS GPSSSYRREQ IFPERPGQPE  300
CQYYMRTGDC KYGATCKYHH PAGRNVHRNN ISLSPLGLPL RPGAQLCTYY AQHGFCKFGP  360
TCKYDHPIGS ASYHPSASSL SDMPVAPYPI GYSIPTLASS SSSSDLRPEF FTTVTASSLN  420
PSESVGSVFP KGGGSTGHGG HVSSSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6635320.0KM663532.1 Ananas bracteatus clone 47988b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087181.10.0zinc finger CCCH domain-containing protein 5-like isoform X1
SwissprotQ5NAW21e-161C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A199W2X50.0A0A199W2X5_ANACO; Zinc finger CCCH domain-containing protein 6
STRINGXP_008796231.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.32e-98C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]