PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco002326.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

SRS

Protein Properties

Length: 304aa MW: 32009.5 Da PI: 8.5837

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco002326.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	222.7	7.3e-69	73	232	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100 s +++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq +aa + a +sa+++a+k++r s++++++s+t++s++++++++ Aco002326.1 73 SSSSTCQDCGNQAKKDCTHRRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTAA-NIGAGSSASTSAPKKPRLI-SSQTTTTSHTSTSNTTPPRSF 168 56789******************************************9776655.6788888999999999986.88899999*********** PP DUF702 101 etss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +t+s lP++v+++avf+cvrv+s++dge+++aYq+ v+igGhvfkG+LydqG+++ Aco002326.1 169 DTTSshqdasfresLPRHVQAPAVFKCVRVTSIEDGEDQYAYQAMVTIGGHVFKGFLYDQGVDD 232 9999*******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.6E-63	75	231	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.0E-27	77	119	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.6E-28	183	230	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MNRFFSYHLF LSQLGLITLK PGTATSSIQF LQPQPQLPSR PVAAISYMRK PVPMFDAPGI 60 LSGAGVGLAG SSSSSSTCQD CGNQAKKDCT HRRCRTCCKS RGFDCSTHVK STWVPAARRR 120 ERQQLTAANI GAGSSASTSA PKKPRLISSQ TTTTSHTSTS NTTPPRSFDT TSSHQDASFR 180 ESLPRHVQAP AVFKCVRVTS IEDGEDQYAY QAMVTIGGHV FKGFLYDQGV DDGADHDHDH 240 DHDHAAATSN ASAIPNISEL HLGGGARNGA SSSSPMLPSD VYGGGPHGGG GFLGGTNFGN 300 PIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020085642.1	1e-140	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	2e-70	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	M0U8V1	1e-106	M0U8V1_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP13420_001	1e-107	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-60	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Aco002326.1

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]