PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco002292.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

TCP

Protein Properties

Length: 341aa MW: 37894 Da PI: 6.2927

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco002292.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	91.4	1.9e-28	46	159	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 g+kdrhsk+ T +g+RdRRvRls+++a++++dLq++LG+ ++sk ++WLl++a+++i++l+ ++ +++ + ++s s ++ s + Aco002292.1 46 FGGKDRHSKVRTIRGLRDRRVRLSVPTAIQLYDLQEKLGVNQPSKVVDWLLNAAQQEIDKLPPLQLPPHFDIhFPHSTPISIEETSLRapfgaqtven 143 689*************************************************************7777744442222222222222222222222223 PP TCP 89 ...............k 89 + Aco002292.1 144 lehkrgngprplslfS 159 3333333444444331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.403	48	106	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.6E-26	48	121	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0031347	Biological Process	regulation of defense response
GO:0045962	Biological Process	positive regulation of development, heterochronic
GO:0009507	Cellular Component	chloroplast

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MLKDPRENDF LTKEEGDTTD DRKPTTSLRQ WSGLKDPRIV RVSRAFGGKD RHSKVRTIRG 60 LRDRRVRLSV PTAIQLYDLQ EKLGVNQPSK VVDWLLNAAQ QEIDKLPPLQ LPPHFDIHFP 120 HSTPISIEET SLRAPFGAQT VENLEHKRGN GPRPLSLFSK ANEDGFGNQV PPENLATMQR 180 SLFWTPDGQQ RARQRVIMEN QDAGNNYAQF STDYQLGVPN SSAGLISNVM QYTSHFPSDP 240 SNAHLVHSSQ EVSHSSVPSL LSLNTPGSQL VFYPPGSFPS YVANSSGFDG KEASHLPPES 300 FDAEFEFNTN SVARGSKLQT LGDLHLRDIE NAESDVNTVE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-17	53	107	1	55	Putative transcription factor PCF6
5zkt_B	2e-17	53	107	1	55	Putative transcription factor PCF6

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00326	DAP	Transfer from AT3G02150	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM663169	1e-42	KM663169.1 Ananas bracteatus clone 47455a microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020085683.1	0.0	transcription factor TCP24-like
Refseq	XP_020085684.1	0.0	transcription factor TCP24-like
Refseq	XP_020085685.1	0.0	transcription factor TCP24-like
Refseq	XP_020085687.1	0.0	transcription factor TCP24-like
Refseq	XP_020085688.1	0.0	transcription factor TCP24-like
Refseq	XP_020085689.1	0.0	transcription factor TCP24-like
Refseq	XP_020085690.1	0.0	transcription factor TCP24-like
Refseq	XP_020085691.1	0.0	transcription factor TCP24-like
Refseq	XP_020085692.1	0.0	transcription factor TCP24-like
TrEMBL	A0A199V5H3	0.0	A0A199V5H3_ANACO; Transcription factor TCP13
STRING	XP_008786002.1	6e-83	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2490	35	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	8e-44	plastid transcription factor 1

Link Out ? help Back to Top
Phytozome	Aco002292.1