PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002292.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family TCP
Protein Properties Length: 341aa    MW: 37894 Da    PI: 6.2927
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002292.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.41.9e-2846159289
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                   g+kdrhsk+ T +g+RdRRvRls+++a++++dLq++LG+ ++sk ++WLl++a+++i++l+ ++ +++ +   ++s   s ++ s +          
  Aco002292.1  46 FGGKDRHSKVRTIRGLRDRRVRLSVPTAIQLYDLQEKLGVNQPSKVVDWLLNAAQQEIDKLPPLQLPPHFDIhFPHSTPISIEETSLRapfgaqtven 143
                  689*************************************************************7777744442222222222222222222222223 PP

          TCP  89 ...............k 89 
                                 +
  Aco002292.1 144 lehkrgngprplslfS 159
                  3333333444444331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.40348106IPR017887Transcription factor TCP subgroup
PfamPF036341.6E-2648121IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MLKDPRENDF LTKEEGDTTD DRKPTTSLRQ WSGLKDPRIV RVSRAFGGKD RHSKVRTIRG  60
LRDRRVRLSV PTAIQLYDLQ EKLGVNQPSK VVDWLLNAAQ QEIDKLPPLQ LPPHFDIHFP  120
HSTPISIEET SLRAPFGAQT VENLEHKRGN GPRPLSLFSK ANEDGFGNQV PPENLATMQR  180
SLFWTPDGQQ RARQRVIMEN QDAGNNYAQF STDYQLGVPN SSAGLISNVM QYTSHFPSDP  240
SNAHLVHSSQ EVSHSSVPSL LSLNTPGSQL VFYPPGSFPS YVANSSGFDG KEASHLPPES  300
FDAEFEFNTN SVARGSKLQT LGDLHLRDIE NAESDVNTVE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1753107155Putative transcription factor PCF6
5zkt_B2e-1753107155Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6631691e-42KM663169.1 Ananas bracteatus clone 47455a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085683.10.0transcription factor TCP24-like
RefseqXP_020085684.10.0transcription factor TCP24-like
RefseqXP_020085685.10.0transcription factor TCP24-like
RefseqXP_020085687.10.0transcription factor TCP24-like
RefseqXP_020085688.10.0transcription factor TCP24-like
RefseqXP_020085689.10.0transcription factor TCP24-like
RefseqXP_020085690.10.0transcription factor TCP24-like
RefseqXP_020085691.10.0transcription factor TCP24-like
RefseqXP_020085692.10.0transcription factor TCP24-like
TrEMBLA0A199V5H30.0A0A199V5H3_ANACO; Transcription factor TCP13
STRINGXP_008786002.16e-83(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.18e-44plastid transcription factor 1