PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002246.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 293aa    MW: 32596.6 Da    PI: 7.2205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002246.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-14129175354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  + h  +Er+RR+++N++f eL   +P +     kK++Ka+iLe Av+Y+k+L
  Aco002246.1 129 QDHIVAERKRREKLNQRFIELSAAIPGL-----KKMDKASILEDAVKYVKEL 175
                  67999***********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.463126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-12129175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-18130186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-17130192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.23E-14131180No hitNo description
SMARTSM003532.6E-15132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MQSELKGMDD SNISHQWTMN SFNQVIPSHQ IVAASGESSQ PSLSQESFSS CPNSFYTTRN  60
DVSSSNSILT HSPNSLFGWS NTFGRPSTQP KEEVEFVISY NNSEQNYEAI GSKQRSNMVK  120
FGAASPQAQD HIVAERKRRE KLNQRFIELS AAIPGLKKMD KASILEDAVK YVKELSEKVK  180
TLEDQSPKTI ESVVLRKKSC RSCDQDGSSS YNNHDSKRCL SEKPLPEIDA RIHEKNILVR  240
IHCENLKGVL VKVLSEIEEL HLSVTNTSLM PFQGGSIIIT VIAQASSSQL NST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-13130179857Transcription factor MYC2
5gnj_B6e-13130179857Transcription factor MYC2
5gnj_E6e-13130179857Transcription factor MYC2
5gnj_F6e-13130179857Transcription factor MYC2
5gnj_G6e-13130179857Transcription factor MYC2
5gnj_I6e-13130179857Transcription factor MYC2
5gnj_M6e-13130179857Transcription factor MYC2
5gnj_N6e-13130179857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139ERKRRE
2135140RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086267.10.0transcription factor bHLH18-like isoform X1
TrEMBLA0A199VWN40.0A0A199VWN4_ANACO; Transcription factor bHLH25
STRINGXP_008787362.16e-69(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-44bHLH family protein