PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002225.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 559aa    MW: 62251.1 Da    PI: 5.4949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002225.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12291333855
                  HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +rRRdriN+++  L+el+P++      K +Ka++L +A+ Y+ksLq
  Aco002225.1 291 LMQRRRDRINKKMKALQELIPNC-----NKTDKASMLDEAIGYLKSLQ 333
                  569*******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-12290338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-16291349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-16293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-11293337No hitNo description
PfamPF000101.7E-9293333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF139662.2E-15453506IPR026960Reverse transcriptase zinc-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MEENSRSFSD LLAKSNQMKP IRPDNELVEL LWHNGQIVLH NQTHRKSPPP CIDFRQSQNP  60
KSVLKSEITN VNANNLAQED ETMSWFQYPI DDPLERDFYT EFFELPNGGF NDNSLGKEKC  120
AETENESNAV NLGSGVQVGG GGECSSIMTI GSSICGSNQV PTQVEGSNLH HLNTAKLPIE  180
GNNYNSSTHE ATATSSSGGS GCSIGITQQQ SISNQGTKRK ERSTEESESQ SEEAEQESIE  240
ANEPTKQSAS RRSRAAEVHN LSERVRLTDD PEIKPACLIP QSPYSIANSF LMQRRRDRIN  300
KKMKALQELI PNCNKTDKAS MLDEAIGYLK SLQLQVQMMW MGSGMAQMMF PGVHQFMSHA  360
TMGMNPASMP SMHYPVQMPT VPFCSSESFP NQMQNINFPG LNSMQVTNFC VNGACSLQSN  420
QISVLPSYNL SHAIGEFPTE NVRDDKSKYS EDPLKVKVFC WLLLKKRILT ADVLVRRGWT  480
GNTVYVLCGG EEETTDHLFS RCVYFRFLLV MTLDDTEIAG LGLGVHPLLD SLAARSSMPP  540
KARLDVLVAA WWVTWEIRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6679251e-101KM667925.1 Ananas bracteatus clone 53383 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020080813.10.0transcription factor PIF5-like isoform X2
RefseqXP_020085760.10.0transcription factor PIF5-like isoform X2
TrEMBLA0A199VXI30.0A0A199VXI3_ANACO; Transcription factor PIF1
STRINGGSMUA_Achr5P02280_0017e-93(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.18e-24phytochrome interacting factor 3-like 5