PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002210.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-YA
Protein Properties Length: 177aa    MW: 19997 Da    PI: 10.3142
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA84.61.6e-263994258
    CBFB_NFYA  2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                 +++YVNaKQ+q I +RR++Ra++e+e+kl +k r+pyl+eSRh+hA++RpRgs GrF
  Aco002210.1 39 AAVYVNAKQFQCIRRRREARARAERENKL-IKVRRPYLYESRHQHAVHRPRGSTGRF 94
                 789**************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-263697IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115229.673797IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.0E-234094IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.8E-184062IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.8E-187194IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MNIHGNNLLY RLTLIDLIYF FAFAMENPRV PLNSSTEDAA VYVNAKQFQC IRRRREARAR  60
AERENKLIKV RRPYLYESRH QHAVHRPRGS TGRFVKTKSD GNEQPNKSPP PPPPPPPPPP  120
QAYPTIPSNP DLVLPHAYTE EVNNGLPPQL PLLSTPPPLL LPPTKYPAAS SISDMKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-144195559NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086175.11e-104nuclear transcription factor Y subunit A-2-like
TrEMBLA0A199V8E84e-23A0A199V8E8_ANACO; Nuclear transcription factor Y subunit A-10
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.14e-17nuclear factor Y, subunit A9