PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002163.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family CPP
Protein Properties Length: 325aa    MW: 36413.3 Da    PI: 5.9122
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002163.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.72.6e-1466103340
          TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  +++C+Ckks+Clk+YC Cf+ g++Cse C C++C+Nk 
  Aco002163.1  66 CRPCSCKKSRCLKLYCICFSTGTYCSELCGCQQCFNKL 103
                  789*********************************95 PP
2TCR48.31.9e-15146182339
          TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  k+gC+Ckks+ClkkYC+C+++g  C+  CkCedCkN 
  Aco002163.1 146 KRGCTCKKSSCLKKYCDCYQSGIGCTIYCKCEDCKNV 182
                  689*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.3E-1164105IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.51465184IPR005172CRC domain
PfamPF036382.7E-1067102IPR005172CRC domain
SMARTSM011143.5E-14144185IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-11146181IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDPEAAPPPP SSPPLESNPE DRVEAPAEAG KEAERSAEPA SVEEMNNSED AGDKKRSEDG  60
GEGEGCRPCS CKKSRCLKLY CICFSTGTYC SELCGCQQCF NKLTYKEEVL SARKELQLRN  120
KFSPSSKALR SSEDETKKSP GSALVKRGCT CKKSSCLKKY CDCYQSGIGC TIYCKCEDCK  180
NVFGRKDAED EEDYPIAYRS PYSKESLFLQ DHPDDIGGHI IAQPLSQLQP PPWCLKRPVE  240
NGIMDVPTSY ADYRYPRDKQ LQPKHEKVYS ISKCIEVMNA MTELSKNEKS LAPDVFLEPS  300
NREIFLSLSA DIRMMWLRRK LQNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-126718212121Protein lin-54 homolog
5fd3_B4e-126718212121Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6624341e-138KM662434.1 Ananas bracteatus clone 46150a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087369.10.0protein tesmin/TSO1-like CXC 2 isoform X4
SwissprotF4JIF54e-46TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLA0A199VPV60.0A0A199VPV6_ANACO; Protein tesmin/TSO1-like CXC 2
STRINGLPERR05G18130.11e-82(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-48TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]