PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001897.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 420aa    MW: 45430.3 Da    PI: 8.5005
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001897.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.7e-112854127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C +++rtG C++G+rC+++H++
  Aco001897.1 28 PGEPDCTYYLRTGLCSFGERCRYNHPR 54
                 5789*********************96 PP
2zf-CCCH39.97.2e-1376102127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++++++GtCk+G++CkF+H++
  Aco001897.1  76 PGQPECPYYMKNGTCKFGSTCKFHHPK 102
                  5789*********************96 PP
3zf-CCCH391.3e-12122147227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+++++tG+Ck+G +CkF+H++
  Aco001897.1 122 GEKECSYYMKTGQCKFGLTCKFHHPE 147
                  7899********************96 PP
4zf-CCCH39.68.5e-13247273127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++++rtG Ck+G++Ck++H+p
  Aco001897.1 247 PGQPECQYYMRTGDCKFGATCKYHHPP 273
                  5789*********************97 PP
5zf-CCCH35.32e-11296319427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                   +C +++r G+Ck+G+ C+F H++
  Aco001897.1 296 QPCTYYMRHGECKFGPACRFDHPM 319
                  58********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.7E-62754IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.452755IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-92954IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-63255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-43354IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-775102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.26775103IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-1077102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-679102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-481101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.831120148IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6120147IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10122147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6122148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4126146IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6246273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.45246274IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10248273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5250274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4252272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187292320IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5292319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6293322IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-9296319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4296317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MERPRDTGLE EPMWRLRLGG NTGYPLRPGE PDCTYYLRTG LCSFGERCRY NHPRDRSGAL  60
LPGTGRSGMV EYPERPGQPE CPYYMKNGTC KFGSTCKFHH PKQGGHVQQV LLNYFGYPLR  120
PGEKECSYYM KTGQCKFGLT CKFHHPEPSS VPSSQQYPPL ATMQLGTSVM PRPYVSGSYG  180
PMMVSPGVLP MPYPAPVSPV LSRGGQQTVQ AGPAYNIAHQ AAPLEPGSSL AGFSGSGQGD  240
HKFPERPGQP ECQYYMRTGD CKFGATCKYH HPPNRSIAKT DCHLSPLGLP LRPDAQPCTY  300
YMRHGECKFG PACRFDHPMG SMSYSPSASS LSDMPVAPYP IGYAVATLAP SSSSSDLRLE  360
YFTTKDSASS RMASVESASG SIGSIFSRGG YAPHAFIHPQ TSLVAVSASS TSHGSEISG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020108313.10.0zinc finger CCCH domain-containing protein 6-like isoform X1
SwissprotQ5NAW21e-152C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A2H3YBG01e-180A0A2H3YBG0_PHODC; zinc finger CCCH domain-containing protein 6-like isoform X1
STRINGXP_008796231.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-113C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]