PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001756.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 363aa    MW: 40043.6 Da    PI: 5.518
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001756.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.56.1e-12106162155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +   g krk  + g ++ +e+Aa+a++ a++k++g
  Aco001756.1 106 SVYRGVTRHRWTGRYEAHLWDnTCRrEGqKRKGRQ-GGYDKEEKAARAYDLAALKYWG 162
                  78*******************55554446667777.669999**************97 PP
2AP250.84.3e-16205256155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Aco001756.1 205 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDVAAIKFRG 256
                  57****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.75E-19106171No hitNo description
PfamPF008473.5E-9106162IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-15106172IPR016177DNA-binding domain
SMARTSM003803.7E-21107176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-13107171IPR001471AP2/ERF domain
PROSITE profilePS5103217.952107170IPR001471AP2/ERF domain
PRINTSPR003675.6E-7108119IPR001471AP2/ERF domain
PfamPF008476.2E-11205256IPR001471AP2/ERF domain
CDDcd000184.78E-12205266No hitNo description
SuperFamilySSF541712.09E-18205266IPR016177DNA-binding domain
SMARTSM003808.8E-31206270IPR001471AP2/ERF domain
PROSITE profilePS5103219.269206264IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-19206265IPR001471AP2/ERF domain
PRINTSPR003675.6E-7246266IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAPTNTWFSV PFPTMEMLLR PCSYDQIDPS LAAPAPYQRY DQLLPQATKM EAIVVGDGEG  60
SAPEPLDPST ETLIGAPGSS APPPPPRGEE EEEERRVGMG SVQRTSVYRG VTRHRWTGRY  120
EAHLWDNTCR REGQKRKGRQ GGYDKEEKAA RAYDLAALKY WGLSAVTNFP AENYSKEIEV  180
MKDMSKQEFI ASLRRNSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE  240
EEAAEAYDVA AIKFRGANAV TNFELSRYDI AAIASTELPI GSSAKRLKHS MQDSDGELAS  300
NGSFIPEPTN GLSNSLPSAL FCNLLQLDPP NYEFSASLAY YNIGETNPDA CRQCVYLLSD  360
SN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020108801.10.0AP2-like ethylene-responsive transcription factor AIL7
RefseqXP_020108802.10.0AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ6PQQ41e-107BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A199VWX30.0A0A199VWX3_ANACO; AP2-like ethylene-responsive transcription factor BBM (Fragment)
STRINGXP_008793348.11e-128(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.25e-93AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]