PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001748.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 274aa    MW: 31214.8 Da    PI: 4.8669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001748.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.8e-191663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd llv++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
      Aco001748.1 16 RGPWSDEEDILLVNYIAIHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 63
                     89********************************************97 PP

2Myb_DNA-binding50.45e-1669112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
      Aco001748.1  69 RGNISPEEQLLILELHSRWGNR-WSKIAQFLP-GRTDNEIKNYWRT 112
                      7899******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.711163IPR017930Myb domain
SuperFamilySSF466893.67E-3113110IPR009057Homeodomain-like
SMARTSM007176.7E-161565IPR001005SANT/Myb domain
PfamPF002499.4E-171663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-231770IPR009057Homeodomain-like
CDDcd001672.97E-121863No hitNo description
PROSITE profilePS5129423.02964118IPR017930Myb domain
SMARTSM007171.6E-1468116IPR001005SANT/Myb domain
PfamPF002495.9E-1569112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2371117IPR009057Homeodomain-like
CDDcd001676.28E-1173112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
METGVEAHEE ELGLRRGPWS DEEDILLVNY IAIHGEGRWN SLARCAGLKR TGKSCRLRWL  60
NYLRPDVRRG NISPEEQLLI LELHSRWGNR WSKIAQFLPG RTDNEIKNYW RTRVQKHAKQ  120
LRCDVNSKQF KDIMRYLWMP RLMEKIRAAS DNKNIPTVND QTTSEITETT GHANTSPEIS  180
CVTGSSSESF GMQFSSPPVS DSFDGCYETQ RDDDRGGDAM QPAQFGGDWS EPLPSPGGDT  240
YLGLPDLDLG NWQENLGLEN LWSVEDIWLQ QQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241411625126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6635761e-57KM663576.1 Ananas bracteatus clone 48062 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107921.10.0transcription factor MYB108-like
SwissprotQ10MB44e-86MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A199VXL60.0A0A199VXL6_ANACO; Transcription factor MYB108
STRINGXP_008793362.11e-121(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.15e-82myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]