PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001684.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 479aa MW: 51598.5 Da PI: 4.7862

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001684.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.5e-39	130	189	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Aco001684.1 130 PDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGSMRNVPVGAGRRKNKNS 189 78999*****************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	127	187	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.2E-32	131	188	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.003	134	188	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	136	172	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MYELRDPAIK LFGRTIPLPE AAPPPPPPPP EEEEEEAEGG ADPAPPSETS MEAEQDTDKE 60 IKETEVNSIK PGVPEEDHPE PNCSSGLESA SSDDLQTPAC EDKSEAELKS EQVKSEGEGS 120 NQDSKALKKP DKVLPCPRCN SMDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGSMRNVPVG 180 AGRRKNKNSC SQFRHIMLSS DGMAAGRADT PDFTNHQAIS CGPGPSVPPR PIKGNGTVLK 240 FGPEVPLCES MASVLNIGEQ KNNTENKEES MEASNCVENG LPPSVAQNGP NSMQGYCNGF 300 TPQHPLPYYP PTPFVYPWSP GYCNGPPPMM PAHALSPPAI PFPFVPSPFW ACLPGWPNGM 360 WNGPWPVSNG VLSPSSPTSN SSCSGNGSPS LGKHSRDANL LGEEKVEKSL WVPKTLRIDD 420 PDDAAKSSIW TTLGIKPDEG GIFKSFKSKA EAKKSDASQV LQANPAALSR SQSFQEST*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MYELRDPAIK LFGRTIPLPE AAPPPPPPPP EEEEEEAEGG ADPAPPSETS MEAEQDTDKE  60
IKETEVNSIK PGVPEEDHPE PNCSSGLESA SSDDLQTPAC EDKSEAELKS EQVKSEGEGS  120
NQDSKALKKP DKVLPCPRCN SMDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGSMRNVPVG  180
AGRRKNKNSC SQFRHIMLSS DGMAAGRADT PDFTNHQAIS CGPGPSVPPR PIKGNGTVLK  240
FGPEVPLCES MASVLNIGEQ KNNTENKEES MEASNCVENG LPPSVAQNGP NSMQGYCNGF  300
TPQHPLPYYP PTPFVYPWSP GYCNGPPPMM PAHALSPPAI PFPFVPSPFW ACLPGWPNGM  360
WNGPWPVSNG VLSPSSPTSN SSCSGNGSPS LGKHSRDANL LGEEKVEKSL WVPKTLRIDD  420
PDDAAKSSIW TTLGIKPDEG GIFKSFKSKA EAKKSDASQV LQANPAALSR SQSFQEST*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM665070	1e-177	KM665070.1 Ananas bracteatus clone 50162b microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020108553.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A199V7N7	0.0	A0A199V7N7_ANACO; Cyclic dof factor 3
STRING	XP_008793337.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-63	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Aco001684.1