PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001523.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 461aa    MW: 50152.4 Da    PI: 7.4145
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001523.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17152201155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Aco001523.1 152 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 201
                  78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-9152201IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-16152210IPR016177DNA-binding domain
CDDcd000182.75E-11153211No hitNo description
SMARTSM003808.0E-33153215IPR001471AP2/ERF domain
PROSITE profilePS5103217.794153209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-17153210IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-6244288IPR016177DNA-binding domain
CDDcd000181.41E-12244287No hitNo description
SMARTSM003801.0E-12245293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MVGESGTMLD LNVSGGSRES RGKRQSAGHG SDSGTSDSSV LNADASPNVA DENSISTPIQ  60
FSILKSSEAG AEAEAEEDDG NGVSPGSDII TRELFPLSAS AASDRLHPPP VASSSSSVRP  120
NWVDLSFSQK QPLPQQQQQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  180
GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYDEDMKQM RNLTKEEFVH ILRRQSTGFS  240
RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAIKCNGR EAVTNFEPNT YEGELISEAD  300
GEAAGNDLDL NLSISQPVSP TLKKDQNSVS MQFHYGSLGT SETNSSKARK LLDNPSFQLA  360
GPHSLAVLRD QHHPWIAQYP AYFPSSEEIA KEKRPEMGSQ ALPSWAWQVD RPTPIPLFSS  420
AASSGFSTPA FSLPPPAPPP ASTSHLHFDP PASSSYSFKS *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3506280.0KU350628.1 Aechmea fasciata APETALA2-like protein (AP2-1) mRNA, complete cds; plastid.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020108358.10.0ethylene-responsive transcription factor RAP2-7-like isoform X3
SwissprotB8AXC31e-109AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A199VBC90.0A0A199VBC9_ANACO; Ethylene-responsive transcription factor RAP2-7
STRINGXP_008789029.11e-152(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.17e-90related to AP2.7