PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco001482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | C2H2 | ||||||||
Protein Properties | Length: 193aa MW: 20910.5 Da PI: 7.3102 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.3 | 6.4e-06 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F++ L H+r+H Aco001482.1 53 FECKTCGRRFPSFQALGGHMRRH 75 89********************9 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0016 | 117 | 139 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H Aco001482.1 117 HECSICGLEFALGQALGGHMRRH 139 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.14E-10 | 51 | 75 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.2E-4 | 51 | 75 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.6E-13 | 52 | 77 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0028 | 53 | 75 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.72 | 53 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.14E-10 | 112 | 139 | No hit | No description |
Pfam | PF13912 | 4.2E-10 | 116 | 141 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.058 | 117 | 144 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 117 | 139 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 119 | 139 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MKRHRFPDRE VGEVEVESIN MANMLMFLSR GDGGGGGSGY GGGETDSNSQ RVFECKTCGR 60 RFPSFQALGG HMRRHRAAVA AAEEEALGGH RASHKKPRLS GDSAEAAEAA VAKPRVHECS 120 ICGLEFALGQ ALGGHMRRHR AAVAAAEEEV EGCGNFRIVL EKKHERKGED EKRGSWLDLD 180 LNMAPPLVDF FH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM661772 | 8e-92 | KM661772.1 Ananas bracteatus clone 44663 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020107896.1 | 3e-92 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A199UV17 | 6e-84 | A0A199UV17_ANACO; Zinc finger protein ZAT5 | ||||
STRING | XP_008807730.1 | 9e-42 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 9e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco001482.1 |