PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco001378.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 33111.8 Da PI: 6.6016 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.2e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed ll ++++ +G g+W++ ar g++Rt+k+c++rw++yl Aco001378.1 16 RGPWTLQEDTLLTHYIACHGEGRWNLLARSSGLKRTGKSCRLRWLNYL 63 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.5e-16 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eE++++++++ ++G++ W++Ia++++ gRt++++k++w++ Aco001378.1 69 RGNLSPEEQLIILELHSKWGNR-WSRIAQYLP-GRTDNEIKNYWRT 112 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.003 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-22 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.59 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 69 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.77E-12 | 73 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009686 | Biological Process | gibberellin biosynthetic process | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MSHEKKGEDE GMELRRGPWT LQEDTLLTHY IACHGEGRWN LLARSSGLKR TGKSCRLRWL 60 NYLKPDIKRG NLSPEEQLII LELHSKWGNR WSRIAQYLPG RTDNEIKNYW RTRVQRQARQ 120 LNVDANSATF HDAVRCYWMP MLVEKMSSSS PSPGFVDPNT PISSIRHDIG HLQGNQQFFV 180 QNSQYPYEDL LSYALNTAGS ENNSPLNGLN YGPEKYDPLI TDEDEFAAQL RSASASASAS 240 ASASMLSGYS DDHHPSYNAI PYSSSGVDSV GNCVWGMDQL SFERKLNELG GYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-25 | 13 | 118 | 4 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00216 | DAP | Transfer from AT1G68320 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020089219.1 | 0.0 | myb-related protein 305-like | ||||
TrEMBL | A0A199UMN2 | 0.0 | A0A199UMN2_ANACO; Transcription factor MYB108 | ||||
STRING | XP_008797802.1 | 3e-98 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 9e-80 | myb domain protein 62 |
Link Out ? help Back to Top | |
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Phytozome | Aco001378.1 |