PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001378.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 294aa    MW: 33111.8 Da    PI: 6.6016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001378.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.2e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed ll ++++ +G g+W++ ar  g++Rt+k+c++rw++yl
      Aco001378.1 16 RGPWTLQEDTLLTHYIACHGEGRWNLLARSSGLKRTGKSCRLRWLNYL 63
                     89********************************************97 PP

2Myb_DNA-binding51.42.5e-1669112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE++++++++ ++G++ W++Ia++++ gRt++++k++w++
      Aco001378.1  69 RGNLSPEEQLIILELHSKWGNR-WSRIAQYLP-GRTDNEIKNYWRT 112
                      7899******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0031163IPR017930Myb domain
SuperFamilySSF466896.36E-3013110IPR009057Homeodomain-like
SMARTSM007171.4E-121565IPR001005SANT/Myb domain
PfamPF002498.9E-141663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-221770IPR009057Homeodomain-like
CDDcd001671.49E-91863No hitNo description
PROSITE profilePS5129425.5964118IPR017930Myb domain
SMARTSM007177.0E-1568116IPR001005SANT/Myb domain
PfamPF002493.2E-1569112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2371117IPR009057Homeodomain-like
CDDcd001679.77E-1273112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSHEKKGEDE GMELRRGPWT LQEDTLLTHY IACHGEGRWN LLARSSGLKR TGKSCRLRWL  60
NYLKPDIKRG NLSPEEQLII LELHSKWGNR WSRIAQYLPG RTDNEIKNYW RTRVQRQARQ  120
LNVDANSATF HDAVRCYWMP MLVEKMSSSS PSPGFVDPNT PISSIRHDIG HLQGNQQFFV  180
QNSQYPYEDL LSYALNTAGS ENNSPLNGLN YGPEKYDPLI TDEDEFAAQL RSASASASAS  240
ASASMLSGYS DDHHPSYNAI PYSSSGVDSV GNCVWGMDQL SFERKLNELG GYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25131184108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020089219.10.0myb-related protein 305-like
TrEMBLA0A199UMN20.0A0A199UMN2_ANACO; Transcription factor MYB108
STRINGXP_008797802.13e-98(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.19e-80myb domain protein 62