PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001331.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 219aa    MW: 23920.5 Da    PI: 8.2191
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001331.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08120160954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Aco001331.1 120 ARLRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 160
                  699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.421111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-13112170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-14115170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-6121160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-6134165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDVDFFNSSP EAQMEFMDMM EKVTSLCDQP IRDFPELPAT PLPHSPPPVN LCGPQTAPPP  60
FRCGAAQEQF ATQPMSSAAA MREMIFRIAA MQPIHIDPES VKPPKRRNVR ISKDPQSVAA  120
RLRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL KTQVQSMERA AAVAAQSGGT  180
ARALSAAASS APVAFSVDGS CYPQWVLDQG FVSTNRSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083257.11e-160transcription factor HEC2-like
SwissprotQ9SND41e-47HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A199UMQ51e-158A0A199UMQ5_ANACO; Transcription factor HEC2
STRINGGSMUA_Achr9P15380_0015e-63(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.16e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]