PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001255.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 326aa    MW: 35644.3 Da    PI: 5.4709
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001255.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.2e-13122173155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+++P++   + ++ + a+i   A++++k+L+
  Aco001255.1 122 QRMTHIAVERNRRKQMNEYLAVLRSIMPPS---YVQRGDQASIIGGAINFVKELE 173
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.55E-13120177No hitNo description
SuperFamilySSF474595.89E-17121189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.173121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-13122189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MALEAVVFPH GLLGYTMKEL CSMGGGGGGG GGCSHGELGW FEEEEEKGVL LGYLEEGGGG  60
DEQSGKRKWD VNWVDTSCSS MVGVFEEWDN VNSLSPPPEP AGGRRKRRRM KSIKNKEEVE  120
NQRMTHIAVE RNRRKQMNEY LAVLRSIMPP SYVQRGDQAS IIGGAINFVK ELEQLLQSLE  180
AQKRSNEQHS ESAPFAEFFT FPQYSSYTAR SPNATAAMVA NESAAAAEEA KGSAAAADIE  240
VTMVESHANL KVLAKRRPKQ LLKLVVGLQN LRLTTLHLNV TTLDRMVLYS FSLKVEDDCQ  300
LSSVDDIAAA VHHIVGKVEE EAAML*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104108RKRRR
2122133RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6612330.0KM661233.1 Ananas bracteatus clone 42754b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020082844.10.0transcription factor bHLH96-like
SwissprotQ9C7T41e-81BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A199UJY80.0A0A199UJY8_ANACO; Transcription factor bHLH96
STRINGXP_010272971.11e-121(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]