PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001218.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 327aa    MW: 36235.9 Da    PI: 6.3677
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001218.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.9e-192976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd ++++G g+W++ ++  g++R++k+c++rw +yl
      Aco001218.1 29 KGPWTPEEDQKLVDFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 76
                     79********************************************97 PP
2Myb_DNA-binding55.21.6e-1782127148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
      Aco001218.1  82 RGKFSAEEEQTILNLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 127
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-262079IPR009057Homeodomain-like
PROSITE profilePS5129418.6722476IPR017930Myb domain
SuperFamilySSF466893.03E-3226123IPR009057Homeodomain-like
SMARTSM007177.2E-162878IPR001005SANT/Myb domain
PfamPF002495.9E-182976IPR001005SANT/Myb domain
CDDcd001677.94E-133176No hitNo description
PROSITE profilePS5129426.2777131IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2780132IPR009057Homeodomain-like
SMARTSM007171.1E-1681129IPR001005SANT/Myb domain
PfamPF002493.0E-1682127IPR001005SANT/Myb domain
CDDcd001671.83E-1284127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MFPPPPSPTR PPPFPMGRSP CCDEHGLKKG PWTPEEDQKL VDFIQKHGHG SWRALPKLAG  60
LNRCGKSCRL RWTNYLRPDI KRGKFSAEEE QTILNLHSIL GNKWSAIATH LPGRTDNEIK  120
NFWNTHLKKR LIQMGIDPMT HRPRTDFFAT LPQLLALANL HELVDHRPWD DHAARLQTEA  180
TTQAVKLQCL QYLLQTAAAV TATSAATNNL SGVAATSESE PLSLWSTPQL LSSQSQVGNE  240
ITDEFGIPCS SMLEQLVNND EAHDLGYNRG DHFGQGENGT IRTPLLSQCS LPPLTDVSSL  300
NPGDACSTFA SPDQLFFDEP FIIEFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-30271315108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110859.10.0myb-related protein Zm38-like
SwissprotQ9S9Z21e-101MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A199USM01e-159A0A199USM0_ANACO; Transcription factor MYB39 (Fragment)
STRINGPavir.J03585.1.p1e-133(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.14e-96myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]