PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001190.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 302aa    MW: 33079.9 Da    PI: 5.8988
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001190.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.7e-20156205255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  Aco001190.1 156 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDRAAFRLRG 205
                  59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.10E-33155215No hitNo description
SMARTSM003806.4E-38156219IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-23156214IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-33156214IPR001471AP2/ERF domain
PROSITE profilePS5103223.354156213IPR001471AP2/ERF domain
PfamPF008477.3E-14157205IPR001471AP2/ERF domain
PRINTSPR003674.8E-11157168IPR001471AP2/ERF domain
PRINTSPR003674.8E-11179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAAAIDMYNP QSVFSSDPFN GELMKALEPF LRRAASPSSP SPSPSPLSSL SSLSSDSTPQ  60
TTTSSSFPSP SPYSSYYSPL ALSSPHQSQS STFYHTEGTV GLQPALERVR PVGLAQLSAA  120
QIECIQAQLH YQQLQQGLGP RAQPMKQQSA PRPAKLYRGV RQRHWGKWVA EIRLPRNRTR  180
LWLGTFDTAE DAALAYDRAA FRLRGDSARL NFPDLRHRHL PLPLPSAAVD AKLHAICQTL  240
APNPEPEPEP ELESSSEASL ASSPVSEIQN LDFTEAPWDE SESLALAKYP SWDIDWDSIL  300
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22154213363ATERF1
3gcc_A4e-22154213363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6656945e-85KM665694.1 Ananas bracteatus clone 50873f microsatellite sequence.
GenBankKM6656955e-85KM665695.1 Ananas bracteatus clone 50873g microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083144.10.0ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A199V6931e-154A0A199V693_ANACO; Ethylene-responsive transcription factor ERF060
STRINGXP_008790815.11e-78(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.15e-32ERF family protein