PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco001157.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 145aa MW: 16098.9 Da PI: 7.7533 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.8 | 1e-16 | 22 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a++ + ++ g Aco001157.1 22 EYLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAVAYDVTAISFSG 71 588******.**********865...5*******************99987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-18 | 21 | 80 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.56 | 22 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-26 | 22 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-26 | 22 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.01E-24 | 23 | 79 | No hit | No description |
Pfam | PF00847 | 1.7E-9 | 23 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-9 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-9 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MAEAPQVIAH RTRRRRSRAS SEYLGVRRRP WGRYAAEIRN PYTKERHWLG TFDTAEEAAV 60 AYDVTAISFS GPARARTNFY YPFFAPPPPP PPPPPPPPSP SSVESEDYLS EITATDDDDS 120 LTIAAILQSF RHSTNLSSSS SLLY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 21 | 79 | 13 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020113857.1 | 7e-99 | ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A199V5T1 | 1e-97 | A0A199V5T1_ANACO; Ethylene-responsive transcription factor ERF088 | ||||
STRING | XP_008809528.1 | 5e-55 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12890.1 | 5e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco001157.1 |