PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001109.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 408aa MW: 46160.2 Da PI: 6.5098

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001109.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169	1.5e-52	26	153	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 + pGfrFhPtdeelv +yLk+kv++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++ Aco001109.1 26 MLPGFRFHPTDEELVGFYLKRKVQQKPLSI-ELIRQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGT 122 579*************************.89***********8888999***********************************9566 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lvfykgra kg ktdW+mhe+rl Aco001109.1 123 KCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 153 67*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-58	24	184	IPR003441	NAC domain
PROSITE profile	PS51005	57.046	26	184	IPR003441	NAC domain
Pfam	PF02365	1.0E-25	28	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
YIGYLEESLG AMEEKSDHVD KSDEVMLPGF RFHPTDEELV GFYLKRKVQQ KPLSIELIRQ 60 LDIYKYDPWD LPKLATTGEK EWYFYCPRDR KYRNSARPNR VTGAGFWKAT GTDRPIYSSE 120 GTKCIGLKKS LVFYKGRAAK GIKTDWMMHE FRLPSLADSS LPKRPLDKNI PANDSWAICR 180 IFKKTNSMAQ RALSHSWVSS FPATNEPEMF FNPQVSLGSQ FGSENFSCIT ETASSVQFSC 240 SKSSHEQDQL LPTTLTQPSF DASSYRPMIN ILESKPCFNP QPSVEMPTSF TFSPFEMPIQ 300 PKSTMDVASL LLNITPTILT DVEKASANSI DFSQPQECNV YTTSLPVEVN GDTCTINNSH 360 WGTTRTINFP FNLPTNLPDE WKTNLTWDSP PCLSDVSTNY STKKCYT*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

YIGYLEESLG AMEEKSDHVD KSDEVMLPGF RFHPTDEELV GFYLKRKVQQ KPLSIELIRQ  60
LDIYKYDPWD LPKLATTGEK EWYFYCPRDR KYRNSARPNR VTGAGFWKAT GTDRPIYSSE  120
GTKCIGLKKS LVFYKGRAAK GIKTDWMMHE FRLPSLADSS LPKRPLDKNI PANDSWAICR  180
IFKKTNSMAQ RALSHSWVSS FPATNEPEMF FNPQVSLGSQ FGSENFSCIT ETASSVQFSC  240
SKSSHEQDQL LPTTLTQPSF DASSYRPMIN ILESKPCFNP QPSVEMPTSF TFSPFEMPIQ  300
PKSTMDVASL LLNITPTILT DVEKASANSI DFSQPQECNV YTTSLPVEVN GDTCTINNSH  360
WGTTRTINFP FNLPTNLPDE WKTNLTWDSP PCLSDVSTNY STKKCYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	28	187	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	28	187	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	28	187	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	28	187	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	28	187	22	171	NAC domain-containing protein 19
3swm_B	2e-53	28	187	22	171	NAC domain-containing protein 19
3swm_C	2e-53	28	187	22	171	NAC domain-containing protein 19
3swm_D	2e-53	28	187	22	171	NAC domain-containing protein 19
3swp_A	2e-53	28	187	22	171	NAC domain-containing protein 19
3swp_B	2e-53	28	187	22	171	NAC domain-containing protein 19
3swp_C	2e-53	28	187	22	171	NAC domain-containing protein 19
3swp_D	2e-53	28	187	22	171	NAC domain-containing protein 19
4dul_A	2e-53	28	187	19	168	NAC domain-containing protein 19
4dul_B	2e-53	28	187	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020083440.1	0.0	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	1e-106	FEZ_ARATH; Protein FEZ
TrEMBL	A0A199V147	0.0	A0A199V147_ANACO; Protein FEZ (Fragment)
STRING	XP_008784123.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-109	NAC family protein

Link Out ? help Back to Top
Phytozome	Aco001109.1

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]