PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001074.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 320aa MW: 34272.5 Da PI: 7.7109

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001074.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.3	7.5e-15	136	182	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L +++e++k+L Aco001074.1 136 KSHSEAERRRRQRINGHLAKLRSLLPNT-----TKTDKASLLAEVIEHVKEL 182 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.926	133	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-12	136	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.72E-14	136	185	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.3E-15	136	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-15	137	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-14	139	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	9.9E-5	223	289	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MWEDRVHGLH YTATNTSSTS TTTGATILGG DTATGLLHNP TTILPWAVNP SAYSLPYHAP 60 FNGDFYQPER NFPALGASTD QADLSGLHIG SSTERLLHGK AGGLASTMSI FGSLHAEFGK 120 MSAKEIMDAK ALAASKSHSE AERRRRQRIN GHLAKLRSLL PNTTKTDKAS LLAEVIEHVK 180 ELKRQTTAIT AEGGTLLLPT EADELTVDAA GSDEDGRLVV RASLCCDDRS DLIPDLARAL 240 KSLKLRARRA EIATLGGRVK NVFIITAHDD ACHSDCVASI QETLRAVMDK KTATSDTSSS 300 SSGIKRQRTN RVDEQQGSI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020110634.1	0.0	transcription factor bHLH30-like
Swissprot	Q9S7Y1	8e-70	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A199V132	1e-148	A0A199V132_ANACO; Transcription factor bHLH30
STRING	XP_008782353.1	2e-86	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco001074.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]