PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco001069.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 294aa MW: 33676.5 Da PI: 9.9661 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.8 | 5.1e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev ++ifsstg+lye++s Aco001069.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLMIFSSTGRLYEFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 88.1 | 1.8e-29 | 76 | 170 | 4 | 98 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ + +++++ + +q+e+a L+++++nLq+++R+l+Ge+L+ Ls+k+Lq+Le+qLe sl+ +R kK++ll+++i+el +k + +en++L kk+ Aco001069.1 76 HQLVMNANSEVKFWQREVASLRQQLHNLQENHRQLMGEELSGLSVKDLQNLENQLEMSLRGVRMKKDQLLIDEIQELNQKGSLIYQENMELYKKV 170 4555588999**********************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.861 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.42E-45 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 2.35E-32 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.4E-27 | 83 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.004 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGLMIFSS TGRLYEFAST 60 SMKSVLDRYN KSKEEHQLVM NANSEVKFWQ REVASLRQQL HNLQENHRQL MGEELSGLSV 120 KDLQNLENQL EMSLRGVRMK KDQLLIDEIQ ELNQKGSLIY QENMELYKKV NFIRQENMEL 180 YKKVYETRGA DIVHRAPTIP HNFCIAEDAH VPIHLELSQP QQTDGVQPGA PKLGTIHSNA 240 ADFNYTKEKS MDFFVPTTAG SVFEKARLRQ APQRLGARRG PPRLSNSEAR RYC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-21 | 1 | 83 | 1 | 83 | MEF2C |
5f28_B | 1e-21 | 1 | 83 | 1 | 83 | MEF2C |
5f28_C | 1e-21 | 1 | 83 | 1 | 83 | MEF2C |
5f28_D | 1e-21 | 1 | 83 | 1 | 83 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020083085.1 | 1e-174 | MADS-box transcription factor 27-like isoform X3 | ||||
Swissprot | Q6EP49 | 1e-127 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A199V158 | 0.0 | A0A199V158_ANACO; MADS-box transcription factor 27 | ||||
STRING | XP_008800745.1 | 1e-139 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-105 | AGAMOUS-like 16 |
Link Out ? help Back to Top | |
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Phytozome | Aco001069.1 |
Publications ? help Back to Top | |||
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