PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001045.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB

Protein Properties

Length: 1888aa MW: 211778 Da PI: 6.7604

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001045.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42	2.2e-13	1611	1659	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+ + g+ +W+++++ g+ R++k+c++rw +yl Aco001045.1 1611 KGPWTEEEDKKLVEFILSNNGHcCWRAVPKLAGLLRCGKSCRLRWTNYL 1659 79***********98888778******99**********97 PP
2	Myb_DNA-binding	49.5	9.5e-16	1668	1709	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E+ l +d+++qlG++ W++Ia++++ gRt++++k++w+++ Aco001045.1 1668 LSESEENLVIDLHAQLGNR-WSKIAARLP-GRTDNEIKNHWNTH 1709 5899*************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF11573	6.3E-34	476	1211	IPR021629	Mediator complex, subunit Med23
Gene3D	G3DSA:1.10.10.60	1.1E-18	1602	1661	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.608	1606	1659	IPR017930	Myb domain
SuperFamily	SSF46689	1.05E-23	1608	1706	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-9	1610	1661	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-12	1611	1659	IPR001005	SANT/Myb domain
CDD	cd00167	5.52E-8	1613	1659	No hit	No description
PROSITE profile	PS51294	27.11	1660	1714	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-23	1662	1715	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-15	1664	1712	IPR001005	SANT/Myb domain
Pfam	PF00249	9.0E-14	1668	1709	IPR001005	SANT/Myb domain
CDD	cd00167	1.33E-11	1669	1710	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1888 aa Download sequence Send to blast
MEQNQRGPRP LQLHPARSAI VDLFNLYLGR NSRQRPDDPA QEAANKMQKR VTALNRELPP 60 HDEQFVIDFE QLQGQFPDQE QLRAVTESVL ISFVVQCSSH APQSEFLLFA IRSLCSIGYL 120 KWDSFLPSLL SAVSSVEASA GQGNSVSGGV LSPTSSAVIP NASNYHASNP ASPLSAIHAI 180 GSPAQSTSDQ LASVNLSPAK PPELSGSGQH SGTRGSQYLR GTASNYLRQL SCRVILMGLE 240 SNLKPITHFE IFQHMVNWLV NWDQRQQGLD ESDGMKNWKL ERPLHEWMHL CLDVLWTLVA 300 EDKCRIPFYE LLRSSLQFMD NIPDDEVLFS MIMEIHKRRD MVAMHMQMLD QHLHCPTFAT 360 HRFMTQSYPA VAGEPIANLR YSPITYPSVL GEPLHGEDLA NSIPRGSLDW ERALRCLRHA 420 LRTTPSPDWW RRVLLSAPCY RPHTQQASTP GAVFSPEMIG EAVADRTIEL LKMTNTETQC 480 WLEWLLFADI FFFLMKSGCI DFLDFVDKLA SRVIKGDQQI LRSNHVTWLL AQIIRIEIVM 540 NTLSSDPRKV ETTRKIISFH KEDKNLDSNN INPQNILLDF ISSSQTLRIW SFNTSIREHL 600 NSDQLQKGRQ IDEWWKQMTK GERMIDFMNL DDRSMGMFWV LSFTMAQPAC EAVMNWFTSA 660 GVTDLLQASN VQTNERVMMM RETYPLSMSL LSGLSINLCL KLAYQLEEAI FLGQAIPSIA 720 MVETYVRLLL IAPHSLFRPH FTTLTQRSPS ILSKSGVSLL LLEILNYRLL PLYRYHGKSK 780 ALMYDVTKII SMIKGKRGEH RLFRLAENLC MNLILSIRDF FMVKKELKGP TEFTETLNRI 840 TIISLAITIK TRGIAEVEHM IYLQPLLDQI MATSQHTWSE KTLRFFPPLI RDSLIGRIDK 900 RGQAIQAWQQ AETTVINQCT QLLSPSADPT YVMTYLGHSF PQHRQYLCAG AWMLMNGHPE 960 SINSTNLGRV LREFSPEEVT SNIYTMVDVL LHHIQVEMQR GHLPQDLLSK AIANLVFFIW 1020 THELLPLDIL LLALIDRDDD HYALRIVISL LERPELQKRI KMFCSNRSPP EHWLNNQPPK 1080 RVELQHALGN HLSWKDRYPV FFDDIAARLL PVIPLIIYRL IENDATDISD RVLAFYSSLL 1140 NFHPLRFTFV RDILAYFYGH LPSKLIVRIL KILDISKIPF SDSFPQHVGS SNPASCPPLD 1200 YFANLLLGLV NNVIPSLNSK SKSDSTDSSS NSGRAAFNKS QASPQSGTIN NSDGQKAFYQ 1260 NQDPGSYTQL VLETAAIEIL SLPASASQIV SSLVQVVVHV QSTLIQSSSG LSSGPGQNPA 1320 LPTSPSGGSA ETMSTSRSTA SPTGINCSNF VSRSGYSCQQ LSCLMIQACG LLLAQLPPEF 1380 HVQLYSEASR IIKDCWWLAD SKRSIKELDS AVGYALLDPT WASQDNTSTA IGNIVALLHA 1440 FFSNLPQEWL ESTHTIIKHL RPVTSVAMLR IAFRILGPLL PRLAFGRPFF MKTLALLFNV 1500 LVDVFGKNSQ SSAPTDVSEI ADLIDFLHHA VMYEGQGGPV QSTSKPKDTD SLRQSDGTTK 1560 AGCSTSSFAF EDRSELFNLC RNSSEAAESS IIVFLRLMGR KPCCDKVGLK KGPWTEEEDK 1620 KLVEFILSNN GHCCWRAVPK LAGLLRCGKS CRLRWTNYLR PDLKRGLLSE SEENLVIDLH 1680 AQLGNRWSKI AARLPGRTDN EIKNHWNTHI KKKLKKMGID PVTHEPISSP PPDHEPHHDQ 1740 LVHDQLQGPP PEEPNGETLE KSTTTNTTTN HEGTDPPLNT NSPAFNTDEV PMIQPHEIIA 1800 PSAPHAAAAS SSSSSSSSCS NSSSSSSSFS SVLFASFDEM VVPSMEWAEP VLFLGLDDVL 1860 GWEFSCGDGG EDSRAVFDQE VWKMELF*

Sequence ? help Back to Top

Protein Sequence Length: 1888 aa Download sequence Send to blast

MEQNQRGPRP LQLHPARSAI VDLFNLYLGR NSRQRPDDPA QEAANKMQKR VTALNRELPP  60
HDEQFVIDFE QLQGQFPDQE QLRAVTESVL ISFVVQCSSH APQSEFLLFA IRSLCSIGYL  120
KWDSFLPSLL SAVSSVEASA GQGNSVSGGV LSPTSSAVIP NASNYHASNP ASPLSAIHAI  180
GSPAQSTSDQ LASVNLSPAK PPELSGSGQH SGTRGSQYLR GTASNYLRQL SCRVILMGLE  240
SNLKPITHFE IFQHMVNWLV NWDQRQQGLD ESDGMKNWKL ERPLHEWMHL CLDVLWTLVA  300
EDKCRIPFYE LLRSSLQFMD NIPDDEVLFS MIMEIHKRRD MVAMHMQMLD QHLHCPTFAT  360
HRFMTQSYPA VAGEPIANLR YSPITYPSVL GEPLHGEDLA NSIPRGSLDW ERALRCLRHA  420
LRTTPSPDWW RRVLLSAPCY RPHTQQASTP GAVFSPEMIG EAVADRTIEL LKMTNTETQC  480
WLEWLLFADI FFFLMKSGCI DFLDFVDKLA SRVIKGDQQI LRSNHVTWLL AQIIRIEIVM  540
NTLSSDPRKV ETTRKIISFH KEDKNLDSNN INPQNILLDF ISSSQTLRIW SFNTSIREHL  600
NSDQLQKGRQ IDEWWKQMTK GERMIDFMNL DDRSMGMFWV LSFTMAQPAC EAVMNWFTSA  660
GVTDLLQASN VQTNERVMMM RETYPLSMSL LSGLSINLCL KLAYQLEEAI FLGQAIPSIA  720
MVETYVRLLL IAPHSLFRPH FTTLTQRSPS ILSKSGVSLL LLEILNYRLL PLYRYHGKSK  780
ALMYDVTKII SMIKGKRGEH RLFRLAENLC MNLILSIRDF FMVKKELKGP TEFTETLNRI  840
TIISLAITIK TRGIAEVEHM IYLQPLLDQI MATSQHTWSE KTLRFFPPLI RDSLIGRIDK  900
RGQAIQAWQQ AETTVINQCT QLLSPSADPT YVMTYLGHSF PQHRQYLCAG AWMLMNGHPE  960
SINSTNLGRV LREFSPEEVT SNIYTMVDVL LHHIQVEMQR GHLPQDLLSK AIANLVFFIW  1020
THELLPLDIL LLALIDRDDD HYALRIVISL LERPELQKRI KMFCSNRSPP EHWLNNQPPK  1080
RVELQHALGN HLSWKDRYPV FFDDIAARLL PVIPLIIYRL IENDATDISD RVLAFYSSLL  1140
NFHPLRFTFV RDILAYFYGH LPSKLIVRIL KILDISKIPF SDSFPQHVGS SNPASCPPLD  1200
YFANLLLGLV NNVIPSLNSK SKSDSTDSSS NSGRAAFNKS QASPQSGTIN NSDGQKAFYQ  1260
NQDPGSYTQL VLETAAIEIL SLPASASQIV SSLVQVVVHV QSTLIQSSSG LSSGPGQNPA  1320
LPTSPSGGSA ETMSTSRSTA SPTGINCSNF VSRSGYSCQQ LSCLMIQACG LLLAQLPPEF  1380
HVQLYSEASR IIKDCWWLAD SKRSIKELDS AVGYALLDPT WASQDNTSTA IGNIVALLHA  1440
FFSNLPQEWL ESTHTIIKHL RPVTSVAMLR IAFRILGPLL PRLAFGRPFF MKTLALLFNV  1500
LVDVFGKNSQ SSAPTDVSEI ADLIDFLHHA VMYEGQGGPV QSTSKPKDTD SLRQSDGTTK  1560
AGCSTSSFAF EDRSELFNLC RNSSEAAESS IIVFLRLMGR KPCCDKVGLK KGPWTEEEDK  1620
KLVEFILSNN GHCCWRAVPK LAGLLRCGKS CRLRWTNYLR PDLKRGLLSE SEENLVIDLH  1680
AQLGNRWSKI AARLPGRTDN EIKNHWNTHI KKKLKKMGID PVTHEPISSP PPDHEPHHDQ  1740
LVHDQLQGPP PEEPNGETLE KSTTTNTTTN HEGTDPPLNT NSPAFNTDEV PMIQPHEIIA  1800
PSAPHAAAAS SSSSSSSSCS NSSSSSSSFS SVLFASFDEM VVPSMEWAEP VLFLGLDDVL  1860
GWEFSCGDGG EDSRAVFDQE VWKMELF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-28	1609	1714	5	108	B-MYB
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM667178	1e-159	KM667178.1 Ananas bracteatus clone 52573 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020083151.1	0.0	mediator of RNA polymerase II transcription subunit 23 isoform X2
Swissprot	F4I4P3	0.0	MED23_ARATH; Mediator of RNA polymerase II transcription subunit 23
TrEMBL	A0A3B6NTL7	0.0	A0A3B6NTL7_WHEAT; Uncharacterized protein
STRING	Traes_6DL_95223E1E7.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7034	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16600.1	5e-74	myb domain protein 43

Link Out ? help Back to Top
Phytozome	Aco001045.1

Publications ? help Back to Top
Mathur S,Vyas S,Kapoor S,Tyagi AK The Mediator complex in plants: structure, phylogeny, and expression profiling of representative genes in a dicot (Arabidopsis) and a monocot (rice) during reproduction and abiotic stress. Plant Physiol., 2011. 157(4): p. 1609-27 [PMID:22021418] Dolan WL,Dilkes BP,Stout JM,Bonawitz ND,Chapple C Mediator Complex Subunits MED2, MED5, MED16, and MED23 Genetically Interact in the Regulation of Phenylpropanoid Biosynthesis. Plant Cell, 2017. 29(12): p. 3269-3285 [PMID:29203634]