PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco000939.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

HD-ZIP

Protein Properties

Length: 235aa MW: 26012.4 Da PI: 4.5684

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco000939.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.7e-17	6	50	12	56
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ Le Fe+++++ e++ eLA+klgL+ rqV vWFqNrRa++k Aco000939.1 6 VHLLEVSFEEENKLEPERKSELARKLGLQPRQVAVWFQNRRARWK 50 678*****************************************9 PP
2	HD-ZIP_I/II	120	1.3e-38	3	87	8	92
HD-ZIP_I/II 8 keqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 + +v+lLE sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++yd+l +++++L k++++Lr+++ Aco000939.1 3 EIKVHLLEVSFEEENKLEPERKSELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKSSYDSLLADHDSLLKDNHHLRAQVI 87 56799****************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.342	1	52	IPR001356	Homeobox domain
SMART	SM00389	1.6E-11	1	56	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.27E-16	4	62	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-18	5	59	IPR009057	Homeodomain-like
Pfam	PF00046	9.7E-15	6	50	IPR001356	Homeobox domain
CDD	cd00086	1.27E-15	6	53	No hit	No description
PRINTS	PR00031	8.8E-7	23	32	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	27	50	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.8E-7	32	48	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.1E-17	52	94	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MNEIKVHLLE VSFEEENKLE PERKSELARK LGLQPRQVAV WFQNRRARWK TKQLERDFDR 60 LKSSYDSLLA DHDSLLKDNH HLRAQVISLT EKLQAKEAEA AAALGLKPEE KAPGSNLTEQ 120 TSTATVAALD APPKAEDRLS SGTGGSAVVD GEGAHHGLVV DSSGDSYFPE DYPCIAPVDG 180 GVQSEEDDGV SDEGCSYYAD TVFPAEHHHD GQQDHNHHHQ AAEEDEAQLD WWVW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	44	52	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020096032.1	1e-167	homeobox-leucine zipper protein HOX16-like isoform X2
Swissprot	A2X980	2e-70	HOX16_ORYSI; Homeobox-leucine zipper protein HOX16
Swissprot	Q6YWR4	2e-70	HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBL	A0A199WB39	1e-161	A0A199WB39_ANACO; Homeobox-leucine zipper protein HOX16
STRING	XP_008781998.1	8e-91	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2609	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	8e-49	homeobox 1

Link Out ? help Back to Top
Phytozome	Aco000939.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]