PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco000904.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | bHLH | ||||||||
Protein Properties | Length: 490aa MW: 53955.8 Da PI: 8.5664 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.6 | 0.00026 | 174 | 191 | 2 | 19 |
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR++iN++ Aco000904.1 174 RSKHSATEQRRRSKINDR 191 889*************96 PP | |||||||
2 | HLH | 25.7 | 2.1e-08 | 221 | 253 | 19 | 55 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq Aco000904.1 221 EFQILRELIPHS----DQKRDKASFLLEVIEYIRFLQ 253 69*********9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-19 | 169 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.343 | 172 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.76E-10 | 174 | 257 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-9 | 221 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-5 | 221 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MELQGKKATH DFLSLYTKDS DPKPPPQGFY LKTHDFLQPL ERAEEARKKK RGDESAAVGP 60 AEHVLPGGIG TFSISHVSDP RARAAVKSER GTCAPAPGFG PESKPESVPF ALWGACADHR 120 GQWSSPFAAH VSGSASFGSV SSASSPLNFV TELGVKIDGN GRGGGNDQRP NTPRSKHSAT 180 EQRRRSKIND RQVQAEVFYY SKSLKSKSSI CYSGSRIALD EFQILRELIP HSDQKRDKAS 240 FLLEVIEYIR FLQERVQKYE SSCPEWNEDN VKMMPWVKVY FRSFWKNSRN NNRSPENFIS 300 DSSQINKSGS AHPQQTLLGK INDNHIQIAH TVTSDAPNPT ELNQMAGVSF KATENPPHCP 360 DNNTFQAQNQ WLRSPLVADS AFSNEMLNQH EELAIDDGTI NVSCHYSQEL LTTLSQALQN 420 SGLDLSQASI SVQINLGKRA ANKRSAAVST SSPKDHVPAV NNQASEHARA GNTGQEFSEA 480 PKRRRVDNS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 481 | 485 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM665380 | 5e-55 | KM665380.1 Ananas bracteatus clone 50510 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020083177.1 | 0.0 | transcription factor BIM2-like isoform X2 | ||||
Refseq | XP_020083178.1 | 0.0 | transcription factor BIM2-like isoform X3 | ||||
TrEMBL | A0A199V9N9 | 0.0 | A0A199V9N9_ANACO; Transcription factor BIM2 | ||||
STRING | XP_008788920.1 | 1e-164 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 4e-49 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Aco000904.1 |