PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco000852.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | NF-YC | ||||||||
Protein Properties | Length: 149aa MW: 16597 Da PI: 5.9192 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 145.3 | 1.4e-45 | 37 | 134 | 4 | 98 |
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +fw++q +e++ d+++h lPlarik+i+kadedv+m++aeaP+l+++ace+fi++lt+r+w ha+en+rrtl+++d+a av+rtd+fdfl+d+v Aco000852.1 37 AFWAEQwreVERTVDVREHILPLARIKRIMKADEDVRMVAAEAPALFARACEMFIVDLTFRAWAHAHENRRRTLQRADVAVAVARTDVFDFLLDVVSL 134 79**9998899************************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.61E-28 | 45 | 128 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.4E-32 | 57 | 132 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.4E-20 | 57 | 119 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MDPSGDGSPP PPPPAIVGAA AVVPYAPFPA PPPPREAFWA EQWREVERTV DVREHILPLA 60 RIKRIMKADE DVRMVAAEAP ALFARACEMF IVDLTFRAWA HAHENRRRTL QRADVAVAVA 120 RTDVFDFLLD VVSLHDHPAP YADYYIHP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-44 | 42 | 132 | 3 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020083574.1 | 1e-101 | nuclear transcription factor Y subunit C-6-like | ||||
Swissprot | Q9XE33 | 2e-47 | NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | A0A199VE87 | 5e-99 | A0A199VE87_ANACO; Nuclear transcription factor Y subunit C-3 | ||||
STRING | XP_008802191.1 | 6e-48 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9174 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 3e-40 | nuclear factor Y, subunit C3 |
Link Out ? help Back to Top | |
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Phytozome | Aco000852.1 |
Publications ? help Back to Top | |||
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