PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000726.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family SBP
Protein Properties Length: 1113aa    MW: 121921 Da    PI: 7.7511
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000726.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.56e-41185262178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +Cqv++C+adls+ak+yhrrhkvCevhsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Aco000726.1 185 MCQVDDCRADLSNAKDYHRRHKVCEVHSKTTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 262
                  6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.5E-34179247IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.077183260IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.28E-38184263IPR004333Transcription factor, SBP-box
PfamPF031101.2E-29186259IPR004333Transcription factor, SBP-box
CDDcd002047.77E-58991011No hitNo description
SuperFamilySSF484033.55E-59011005IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.7E-5902995IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1113 aa     Download sequence    Send to blast
MEGEVGPQVA APPPIFFHQP LPGQFHDPKK RGFPWQFHHP QPQQQQQQRA PPSNNSSNPT  60
GNWNPKLWDW DSSSFAAKPS SDVSDALCLG TLPADAEQRK KAAAVAAAAG EDSSSSKASP  120
FRNDPEVGGE NNLTLKLGGG AYLAAPQAGT TAAAAASASA AEEAAIRPSK RVRSGSPGSG  180
GSYPMCQVDD CRADLSNAKD YHRRHKVCEV HSKTTKALVG KQMQRFCQQC SRFHPLSEFD  240
EGKRSCRRRL AGHNRRRRKT QPEEGPPRLL LPGNQENGTN ANLDLVSLLA VLARLQGNNN  300
ACKPPNVPPV PDRDRLAQIL SKINSLNNPN SLTRLPLGGL DLNVSEAPQQ ESSDQAVNRS  360
ENQSAPSTMN LLAVLSAALA ASPSEALASV SQGSSDSSGN DKSKGQCTEP SNDVNSHDKP  420
SQAFPLVGIA KTAFANRSEL ELSKHPVKEA RPCLPLQLFG SSMDDSPPKM GSAIKYLSSE  480
SSNPMEERSP SSSPPVTQKL FPLHSEDTAA VEASTSHRWC APLQLFKDLD RPAENGVMQN  540
ISLPAGYTCS SGSDHSPSSS NSDSQDRTGR IVFKLFGKDP SSFPGNLRAQ ILNWLAHSPS  600
DMESYIRPGC VVLSIYLSMP SIAWEELEEN LLRRVTSLVQ CSNSDFWRNG RFLVRTNRQL  660
VSHKDGIVRL SKSWRTWSAP ELTSVSPLAI VGGQRTSLLL KGCNLTVPGT KIHCTLMGKY  720
TSKEVLSSAY PGTIYDYSSM ESFDFPGGSP LVLGRCFIEV ENGFKGNSFP VIIANSSICQ  780
ELRTLETEFE EDVRTPDVVS EDRIVDNGRP RSREDVLLFL NELGWLFQKA SNTYSTPSYP  840
KIAEPDFLDF SVTRFKYLFT FSVERDWCSV TKTLLDMLVK RSSSSDALAQ ESLDMLSDIH  900
LLNRAVKRKC RRMVDLLLRF SVIQSDNFKM YPFPPNLPGP GGLTPLHVAA SSQGLEEIVD  960
ALTDDPQEIG LKCWESLQDD SGQSPHMYAT LRNNHSYNDL VARKLADKKN DQISLWVGDE  1020
ESFTDEFAVR GENNRASVAQ TFQSRSCAQC AMMKTGLLRR PVRSRGLLNR PYIHSMLAIA  1080
AVCVCVCVFM RGSLRINSVG SFKWENLDYG PI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-31175259184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00664PBMTransfer from Potri.002G002400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6677391e-166KM667739.1 Ananas bracteatus clone 53172a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020081512.10.0squamosa promoter-binding-like protein 15 isoform X1
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A2H3ZU480.0A0A2H3ZU48_PHODC; squamosa promoter-binding-like protein 15
STRINGXP_008799143.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein