PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco000681.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB_related | ||||||||
Protein Properties | Length: 244aa MW: 27441.3 Da PI: 4.4988 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.5e-18 | 24 | 87 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT...................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...................tWktIartmgkgRtlkqcksrwqk 46 rg+WT eEd++l+++++ +G g tW++Ia++++ gRt++++k++w++ Aco000681.1 24 RGPWTMEEDLILINYIANHGEGrwnslarsagyvgsttfapTWSKIAKYLP-GRTDNEIKNYWRT 87 89*************************************************.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-22 | 18 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.216 | 19 | 93 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.12E-14 | 21 | 85 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-12 | 23 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-7 | 24 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.73E-11 | 26 | 87 | No hit | No description |
Pfam | PF00249 | 1.2E-7 | 65 | 87 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEDHERVACS KGQSDQEEEM ELRRGPWTME EDLILINYIA NHGEGRWNSL ARSAGYVGST 60 TFAPTWSKIA KYLPGRTDNE IKNYWRTRVQ KHAKQLQCDV NSKKFKDAMR YVWIPRLIER 120 IRAASGSTSF VAPGVTDLPV TCPEISDASG SPPDSSGTSL SSPPVAEFSE SFDNWHSTLV 180 QGGEFKEGDG IHETQNDNEW IESMMISQGG YGKQEVFEFE ESGWEGGFSD NLWSLEDILF 240 MHQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020099650.1 | 1e-166 | transcription factor MYB108-like | ||||
TrEMBL | A0A199UCT2 | 1e-178 | A0A199UCT2_ANACO; Transcription factor MYB108 | ||||
STRING | XP_008793362.1 | 2e-66 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 7e-52 | myb domain protein 78 |
Link Out ? help Back to Top | |
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Phytozome | Aco000681.1 |