PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco000611.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NF-YC

Protein Properties

Length: 284aa MW: 31274.4 Da PI: 5.1427

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco000611.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.3	1.7e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki+++dedv +i+ +Pvl+ska elf+ +l r++ + + +t+ +++++ + + fdfl d+v + Aco000611.1 6 DTRFPASRIKKIMQTDEDVGKIALAVPVLVSKALELFLQDLCDRTYSITLQRGLKTMSALHLKQCIHSFNAFDFLKDVVKK 86 5789**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.0E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.01E-19	3	89	IPR009072	Histone-fold
Pfam	PF00808	2.1E-17	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MRKKLDTRFP ASRIKKIMQT DEDVGKIALA VPVLVSKALE LFLQDLCDRT YSITLQRGLK 60 TMSALHLKQC IHSFNAFDFL KDVVKKVPDI GGTDAGGDDR SGRKRKAPDE ADSEDESKRT 120 RNDAAIHASG GRGRGRGGRG RGRPRSARSG ERDGSYYDRY VDDLDISPQH DNRTSHPKLE 180 TLDEVSGMRG ATETISSNTA TNTTAVRNFD LNLNWDENGD ASAAPPPAST ATPASETVND 240 IKNEEYPGWS ISDMKNMAID PVQFALSHQR LDEEEEDYDN EDG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-23	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM663285	1e-161	KM663285.1 Ananas bracteatus clone 47608 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020100063.1	0.0	dr1-associated corepressor-like isoform X1
TrEMBL	A0A199W1Y6	1e-164	A0A199W1Y6_ANACO; Dr1-associated corepressor
STRING	XP_008788562.1	1e-99	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	5e-53	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Aco000611.1