PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000605.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 242aa    MW: 26680.8 Da    PI: 5.0509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000605.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-124187354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 ++h e+ErrRR+ri+s +++Lr++l  +     +K++Ka+ L kAve +++L
  Aco000605.1 41 QSHREAERRRRERIKSHLDRLRTVLACD-----PKVDKASLLAKAVERVREL 87
                 68************************98.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.8333887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-114090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-104187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-114292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-94493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.0E-4127180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSATNSGGDI PVPAAYFSMP LETSPATDHP DISDRALTAL QSHREAERRR RERIKSHLDR  60
LRTVLACDPK VDKASLLAKA VERVRELKTR TADIPGSARL LMPTETDEVI VLPTATANPT  120
ASVFEASVCC NDRSDLYSEL VATLRSLRLK TLRAEIATVG GRVRSVLVLS REAGDDEEEE  180
EENRHVDGEE EEEEEEEDRD VECGKGGGGD FLRDALRGLV HRPAPAADRS KRRRVVDRRS  240
T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14651ERRRRE
2230234KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020100780.11e-170transcription factor bHLH106-like
TrEMBLA0A199W3I21e-169A0A199W3I2_ANACO; Transcription factor bHLH106
STRINGXP_008786854.19e-60(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.14e-42bHLH family protein