PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000590.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 624aa    MW: 68828.9 Da    PI: 4.8838
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-17125172148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT  Ed +l+d+vk++G g+W+++ +  g+ R++k+c++rw ++l
      Aco000590.1 125 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLSRCGKSCRLRWANHL 172
                      79******************************************9986 PP
2Myb_DNA-binding49.69.2e-16178221146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++++++++++lG++ W++ a++++ gRt++++k++w++
      Aco000590.1 178 RGAITQEEEDKIIQLHAMLGNK-WAKMAARLP-GRTDNEIKNYWNT 221
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.668120172IPR017930Myb domain
SuperFamilySSF466898.99E-30123219IPR009057Homeodomain-like
SMARTSM007172.6E-15124174IPR001005SANT/Myb domain
PfamPF002493.5E-15125172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-24126179IPR009057Homeodomain-like
CDDcd001671.94E-11127172No hitNo description
PROSITE profilePS5129424.962173227IPR017930Myb domain
SMARTSM007172.1E-15177225IPR001005SANT/Myb domain
PfamPF002491.4E-14178221IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-24180227IPR009057Homeodomain-like
CDDcd001674.04E-11182221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MEVVTFHCYY FYSPLFSSIS PRLRSLFLAL SPSLSISFSI SRSSFEGEEG DEADPLVSLI  60
PVDLSLPTEF DRAPNRFDSR LGQMTNAKKG TETTIMPKDR IDSPSFDEGS SSGGSANGGA  120
PVLKKGPWTS AEDAILIDYV KKHGEGNWNA VQKNSGLSRC GKSCRLRWAN HLRPNLKRGA  180
ITQEEEDKII QLHAMLGNKW AKMAARLPGR TDNEIKNYWN TRIKKRLRMG LPIYPENITV  240
QVQNENQQSH VASSFSSSFP ERPNYIFHGN NVDLPYIIFD NLNANPGALS YLPPPNSNFS  300
LSSMRIQSLG VQNRCFTNSM NHTRQLNETI SLPTGLPVVE QLSSYSYDPD PGSKNPEAPL  360
VSAFGGGHSL LNGFSSASKP LQGAVKLELP SLQYSETDFT TDDPWLDKAV DTYLQSPATI  420
HSVQNNTFAS MQNTGLLESL INISPTVNSL ENRPCPNSSG SSVLTTNDLA EAPEINVYNQ  480
RLVGYNEIAS PWSKFPTFLN ECTPPLCSSP LDELPPPNSP FGSNIIFASG EQIPGPRSSE  540
QETLSRPDFL RPDELLDSNW FHGSSEIAKE DYDVNEVITA LLAEDFCNRP VSIDSTYIFS  600
NGLGLNAFPW KNMPQACQMF ENP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-321192271108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221227RIKKRLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020100522.10.0transcription factor GAMYB-like isoform X1
TrEMBLA0A2H3Y2I11e-157A0A2H3Y2I1_PHODC; transcription factor GAMYB-like isoform X2
STRINGXP_008792432.11e-158(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-79myb domain protein 33