PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco000536.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 30180.8 Da PI: 7.813 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.5 | 3e-18 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Aco000536.1 10 KGPWTEQEDLQLVCFVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2.1e-16 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr T+ E+ l+++++ ++G++ W++Iar+++ gRt++++k++w++++ Aco000536.1 63 RGRLTQHEERLILELHSRWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.273 | 5 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-16 | 9 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.88E-29 | 9 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.5E-17 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-20 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.20E-11 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 25.487 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-15 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-14 | 63 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 65 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.35E-10 | 67 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MVTVKEETRK GPWTEQEDLQ LVCFVRLFGE RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG 60 LKRGRLTQHE ERLILELHSR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQEKKRNNN 120 NNNNNNNNNN NNNKLSPSSP SSSITYQSSL NEDPPPKACT GVEKLEPNSL SRCSGIDDDD 180 HDHDGMHGCY PMEQIWKEIE ASEAVRDDAC NISCHPMMMP PPTPLWDYNS IWSINDDDDE 240 SKNMLFSSPL GEVFGVKLLS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-28 | 7 | 112 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020100984.1 | 0.0 | myb-related protein MYBAS2-like | ||||
Swissprot | Q4JL76 | 7e-84 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | A0A199W2T4 | 1e-154 | A0A199W2T4_ANACO; Myb-related protein MYBAS2 | ||||
STRING | XP_008788078.1 | 1e-90 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 1e-72 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Aco000536.1 |
Publications ? help Back to Top | |||
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