PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000514.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 532aa    MW: 59337.3 Da    PI: 8.9155
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000514.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.9e-184389148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l+++vk++G   W+ Ia+ ++ gR +kqc++rw+++l
      Aco000514.1 43 KGSWTHEEDNKLIHLVKKHGQSKWSIIANFLP-GRIGKQCRERWHNHL 89
                     799*****************************.*************97 PP
2Myb_DNA-binding59.76.2e-1995137145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eE+ +l++a++ +G++ W+ Ia+ ++ gRt++++k++w+
      Aco000514.1  95 KDAWTEEEEIKLINAHRVHGNK-WAEIAKLLP-GRTDNSIKNHWN 137
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.1461437IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.1E-101547IPR009057Homeodomain-like
PROSITE profilePS5129430.9033893IPR017930Myb domain
SuperFamilySSF466896.74E-3240136IPR009057Homeodomain-like
SMARTSM007172.2E-174291IPR001005SANT/Myb domain
CDDcd001671.05E-154589No hitNo description
PfamPF139213.4E-1946106No hitNo description
Gene3DG3DSA:1.10.10.601.4E-264896IPR009057Homeodomain-like
SMARTSM007171.8E-1794142IPR001005SANT/Myb domain
PROSITE profilePS5129421.2294144IPR017930Myb domain
CDDcd001674.21E-1497137No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2397143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MSIGPFVRII LLFYFSLAEG FPGRTDQQCQ HRWAKVLNPH LVKGSWTHEE DNKLIHLVKK  60
HGQSKWSIIA NFLPGRIGKQ CRERWHNHLN PEIKKDAWTE EEEIKLINAH RVHGNKWAEI  120
AKLLPGRTDN SIKNHWNCSM KKRFDFYMAN GKLPPSPKFE CHESSQTEAK LTSQERNFFL  180
GKGSDKSTNF SLLVDSCKLE NRMDLENPAG VPVGKGDSAV DYRTQTVEVD PICNKAVSEE  240
VFGKGLKMIG INQDKRSPST ILDCESSPMF DLICYEPLQL EDFGASVMFS QSCKLESHKR  300
QIGKQEGLSL TVRNCHLGSS IGLSLRSDDS DVRDKKQSEE IGPTFKKADL GENLGRIYKM  360
GETDRPKKRT RSILNNEGTP IFGSICYEPP HSEDLGASIL RTPPSGGGKV SKVQSYQSVL  420
KSAAECFLKL GAPSILRSSK RETQTPLSPL DASSTSMKSN DGNIDKIYKS TISTLATSCC  480
RDSGAISDDG NSYGPSPPYQ LRSKRAAVRK SLEKKLDFSL KDDDFNTNSK I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-581714332158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-581714332158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020101070.10.0uncharacterized protein LOC109718969
TrEMBLA0A199W2X91e-164A0A199W2X9_ANACO; Myb-related protein 3R-1 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.12e-73myb domain protein 3r-3