PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000510.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 661aa    MW: 74923.4 Da    PI: 5.586
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.35.7e-1102856552374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL++cA+av+++d + +++lL+++++++sp+gd++qRla++f  +L+arla+++  +  +l++++ +    ++ l+a++lf  ++P+ + s +  N
  Aco000510.1 285 QTLLIHCAQAVAADDRQSVTELLKQIRQHSSPRGDANQRLAHCFSDGLEARLAGMGCDVTGSLAMKQIP---CVDMLKAYQLFMGACPFKRASSFFSN 379
                  689*****************************************************************9...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  ++Ilea + ++ vHiiD++i +G+QWp L+q+L++Rp+gpp++RiTg++ p++g   +e++e tg+rLa++A++++vpfef++ +a ++e++++e+ r
  Aco000510.1 380 HTILEASKDARVVHIIDYGIFYGFQWPILIQKLSDRPGGPPRIRITGIDLPQTGfrPTERIEDTGRRLADYARRFNVPFEFHA-IAANWETIRVEDVR 476
                  *****************************************************9*****************************.799*********** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++++E l+V + ++  +l+desv  +s+rd+vL+++++++P+v+++   +  h+++ Fl+rf eal y+ ++fd+lea++pre+ +r+ +E  + g+e
  Aco000510.1 477 IEKDELLVVYCLYRFRNLMDESVVADSPRDRVLRTIRKMNPDVFIHGVVNGTHSGPFFLTRFREALFYFHTIFDMLEATIPREDPHRMLIESLIYGQE 574
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  + nv++ceg++r+er et++kW +r  +aGF++++l+ + +k+a+ ++r  + + + v+e s++l+lgWk+r + ++S W+
  Aco000510.1 575 AINVISCEGTKRVERPETYRKWTSRNIRAGFRQLSLNADLVKKARNMVRVLYHKDFVVDEGSNWLLLGWKGRIVNALSTWK 655
                  ****************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.201258635IPR005202Transcription factor GRAS
PfamPF035142.0E-107285655IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MSPNFDLESG LIDPTTIPPL SPPIPVDLEP VDGSEIFPDG ALSYINQLLM EEDFEDKFER  60
YPDYPALLAA AEKPFLEILS EEKHFPESDN HSSSTSSGSG CGSGDIVEIE NTSPCDSIEH  120
FEQESCHLYI DHSSHSYFSS ANNSGGIIEG DLIQQNHPVE FLPGDFKSVI DFEANGFSLA  180
QEVDEKTFSL VEKEEYRDRR GHKNTHIDDL DLEEERSNKQ AAVDGLEGFH QLFYEVLLCN  240
SETCPFRGDN EMRSVHGSHH SKGMGNRKGR RKKQPKGDGD AVDLQTLLIH CAQAVAADDR  300
QSVTELLKQI RQHSSPRGDA NQRLAHCFSD GLEARLAGMG CDVTGSLAMK QIPCVDMLKA  360
YQLFMGACPF KRASSFFSNH TILEASKDAR VVHIIDYGIF YGFQWPILIQ KLSDRPGGPP  420
RIRITGIDLP QTGFRPTERI EDTGRRLADY ARRFNVPFEF HAIAANWETI RVEDVRIEKD  480
ELLVVYCLYR FRNLMDESVV ADSPRDRVLR TIRKMNPDVF IHGVVNGTHS GPFFLTRFRE  540
ALFYFHTIFD MLEATIPRED PHRMLIESLI YGQEAINVIS CEGTKRVERP ETYRKWTSRN  600
IRAGFRQLSL NADLVKKARN MVRVLYHKDF VVDEGSNWLL LGWKGRIVNA LSTWKPNNRS  660
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-532656581382Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020100132.10.0scarecrow-like protein 14
TrEMBLA0A199W2U00.0A0A199W2U0_ANACO; Scarecrow-like protein 14
STRINGXP_008777105.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-160SCARECROW-like 14