PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco000440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 154aa MW: 16521.8 Da PI: 7.5195 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 34.2 | 5.6e-11 | 33 | 111 | 19 | 96 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdiv 96 +lP+ ++k+i+++d ++ ++saea l++ +lf+ l+ + a krr ++ + aa + + +fl+d Aco000440.1 33 PSLPMGKVKRIVRMDREIAKVSAEATLLIALGADLFLASLAAGARDAALRRKRRCIRAEHVRAAAREhPPTAEFLLDCL 111 589**********************************************************988765157889999875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.52E-13 | 33 | 109 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.1E-15 | 33 | 96 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.3E-11 | 34 | 96 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 154 aa Download sequence Send to blast |
MEPIERERGE GEGEEEEEEG GAKELTNGGG ARPSLPMGKV KRIVRMDREI AKVSAEATLL 60 IALGADLFLA SLAAGARDAA LRRKRRCIRA EHVRAAAREH PPTAEFLLDC LSEPTPPPPP 120 KEAVAAKAAA AEKPLPRGTR RIDQFFHKPS EAS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008786575.1 | 9e-41 | uncharacterized protein LOC103704877 | ||||
TrEMBL | A0A199W7M8 | 9e-75 | A0A199W7M8_ANACO; Uncharacterized protein | ||||
STRING | XP_008786575.1 | 4e-40 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13342 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43250.1 | 9e-11 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco000440.1 |