PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco000364.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | NAC | ||||||||
Protein Properties | Length: 305aa MW: 34929.6 Da PI: 6.7897 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.3 | 1.1e-51 | 10 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi++vd++k+ePwdL+ k ++ ++ + ewy Fs++dkky+tg+r+nrat++g+Wkatg+dk+++ Aco000364.1 10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-NVIRDVDLNKLEPWDLEdKcRIGSGPQdEWYCFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIHLG 106 69****************************.99**************943444444345*************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g++ktLvfy+grap+g+k++W+mheyrl Aco000364.1 107 DSRRIGMRKTLVFYTGRAPHGKKSEWIMHEYRL 139 *******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-58 | 8 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.65 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-27 | 11 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MNTTDAPLTV PPGFRFHPTD EELLYYYLRK KVAYEPIDLN VIRDVDLNKL EPWDLEDKCR 60 IGSGPQDEWY CFSHKDKKYP TGTRTNRATA AGFWKATGRD KAIHLGDSRR IGMRKTLVFY 120 TGRAPHGKKS EWIMHEYRLD DESLHEVQED GWVVCRVFKK KNLQQRFINP SEALLDDEDE 180 LDRPPKPASA PALDQQKQIF QMPPDLSFDA SMHLPQLLSA KSCSIAPLIP HVSMNNNTLN 240 HIHCSQHGRF SNGDWSILDK LLASQQSLLI NQQAHDQLVD LGSSVRRFPL QYLGCEVDLL 300 KFSE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-49 | 8 | 166 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-49 | 8 | 166 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-49 | 8 | 166 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-49 | 8 | 166 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-49 | 8 | 166 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-49 | 8 | 166 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-49 | 8 | 166 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-49 | 8 | 166 | 18 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020100718.1 | 0.0 | NAC domain-containing protein 76-like | ||||
Swissprot | Q9MA17 | 1e-101 | SMB_ARATH; Protein SOMBRERO | ||||
TrEMBL | A0A199VLI0 | 0.0 | A0A199VLI0_ANACO; Protein SOMBRERO (Fragment) | ||||
STRING | XP_008783883.1 | 1e-143 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 4e-88 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco000364.1 |
Publications ? help Back to Top | |||
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