PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000272.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 350aa    MW: 38014.7 Da    PI: 7.1523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000272.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12193240355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Aco000272.1 193 QEHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 240
                  5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.497190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10193240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-17193256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-17194252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.60E-12195243No hitNo description
SMARTSM003531.1E-14196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEASAARWFA DLGMEDPMFF HQWETSQLDH FTTQQIAAEF DQDLQQSLSS ESCTNSFPNS  60
YHPPTTAAAA AAAVSNTFHS ASAANSKPPE RPKKALKTNS WDSCMTADRS SAAAAAAAAA  120
APDASSPTIL SFGKPVSRKN EPSLYSEFLA TVKPKEELEF SNVPHGLKRS YEAMSFHGVK  180
KASANSRPAS HNQEHIIAER KRREKLSQRF IALSAIVPGL KKMDKASVLG DAIKYLKQLQ  240
EKVDTLEEQA AKRTVESAVL VKKSRYSPDD DSSSCDESSG DHQHGQSLPE IEAKISEKAV  300
LIKIHCENRK GVLVKALSEI ERLHLSIVNT SVVPFANSSL DITVMAQAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14195243957Transcription factor MYC2
5gnj_B3e-14195243957Transcription factor MYC2
5gnj_E3e-14195243957Transcription factor MYC2
5gnj_F3e-14195243957Transcription factor MYC2
5gnj_G3e-14195243957Transcription factor MYC2
5gnj_I3e-14195243957Transcription factor MYC2
5gnj_M3e-14195243957Transcription factor MYC2
5gnj_N3e-14195243957Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203ERKRRE
2199204RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099657.10.0transcription factor bHLH18-like
SwissprotQ9T0721e-55BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A199VF730.0A0A199VF73_ANACO; Transcription factor bHLH25
STRINGXP_008790398.11e-146(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-52bHLH family protein