PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco000199.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | GATA | ||||||||
Protein Properties | Length: 348aa MW: 37278.3 Da PI: 5.5138 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.8 | 1.9e-15 | 243 | 278 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ kg Aco000199.1 243 CQNCGISEklTPAMRRGPAGPRSLCNACGLMWANKG 278 ********************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.19 | 109 | 144 | IPR010399 | Tify domain |
SMART | SM00979 | 5.3E-9 | 109 | 144 | IPR010399 | Tify domain |
Pfam | PF06200 | 9.2E-13 | 112 | 143 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.136 | 171 | 213 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.5E-15 | 171 | 211 | IPR010402 | CCT domain |
SuperFamily | SSF57716 | 9.98E-11 | 236 | 286 | No hit | No description |
SMART | SM00401 | 1.9E-9 | 237 | 291 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.985 | 237 | 294 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.0E-14 | 241 | 281 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.00E-13 | 243 | 293 | No hit | No description |
Pfam | PF00320 | 3.0E-13 | 243 | 278 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 243 | 270 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MACIIRVRFA LRLIARCPDL GATPLPVPTA PLPPPIASFY LPSRHHHRSR RLPEPISSEG 60 PESPARLPSA IPAAAEDCAA GDDAAAAEEE EEEEEEEEAS APMVVVGGGG VASNQLTLLY 120 QGEVYVFESV SPEKVQAVLL LLGGCEVPSS AVTLAVPPIN VDESMTAPTS RIASLNRFRE 180 KRKERCFDKK IRYAVRKEVA LRMKRQKGQF AGKINPDVEA SASPSCGSPP AKSQDDNPQE 240 RNCQNCGISE KLTPAMRRGP AGPRSLCNAC GLMWANKGIL RSHMKPPKPG IQNPTEVNDL 300 VDASDSEIRS DDNAIVLTSD IHNPIATNAD AYVGPSDFGK FLSNPDK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM664377 | 1e-107 | KM664377.1 Ananas bracteatus clone 49198 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020101086.1 | 1e-180 | GATA transcription factor 19-like isoform X2 | ||||
Swissprot | B8AR30 | 5e-79 | GAT19_ORYSI; GATA transcription factor 19 | ||||
TrEMBL | A0A199UJJ7 | 1e-152 | A0A199UJJ7_ANACO; GATA transcription factor 28 | ||||
STRING | XP_008775860.1 | 1e-91 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 3e-57 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Aco000199.1 |