PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000199.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GATA
Protein Properties Length: 348aa    MW: 37278.3 Da    PI: 5.5138
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000199.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.81.9e-15243278134
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg
  Aco000199.1 243 CQNCGISEklTPAMRRGPAGPRSLCNACGLMWANKG 278
                  ********************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.19109144IPR010399Tify domain
SMARTSM009795.3E-9109144IPR010399Tify domain
PfamPF062009.2E-13112143IPR010399Tify domain
PROSITE profilePS5101713.136171213IPR010402CCT domain
PfamPF062032.5E-15171211IPR010402CCT domain
SuperFamilySSF577169.98E-11236286No hitNo description
SMARTSM004011.9E-9237291IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.985237294IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.0E-14241281IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.00E-13243293No hitNo description
PfamPF003203.0E-13243278IPR000679Zinc finger, GATA-type
PROSITE patternPS003440243270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MACIIRVRFA LRLIARCPDL GATPLPVPTA PLPPPIASFY LPSRHHHRSR RLPEPISSEG  60
PESPARLPSA IPAAAEDCAA GDDAAAAEEE EEEEEEEEAS APMVVVGGGG VASNQLTLLY  120
QGEVYVFESV SPEKVQAVLL LLGGCEVPSS AVTLAVPPIN VDESMTAPTS RIASLNRFRE  180
KRKERCFDKK IRYAVRKEVA LRMKRQKGQF AGKINPDVEA SASPSCGSPP AKSQDDNPQE  240
RNCQNCGISE KLTPAMRRGP AGPRSLCNAC GLMWANKGIL RSHMKPPKPG IQNPTEVNDL  300
VDASDSEIRS DDNAIVLTSD IHNPIATNAD AYVGPSDFGK FLSNPDK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6643771e-107KM664377.1 Ananas bracteatus clone 49198 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020101086.11e-180GATA transcription factor 19-like isoform X2
SwissprotB8AR305e-79GAT19_ORYSI; GATA transcription factor 19
TrEMBLA0A199UJJ71e-152A0A199UJJ7_ANACO; GATA transcription factor 28
STRINGXP_008775860.11e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-57ZIM-like 1