PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco000186.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 268aa MW: 29780.2 Da PI: 6.8561

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco000186.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.9	1.2e-05	41	89	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + erE+ Rd++N+ f eL ll ++ + Ka+iL +++ +++L Aco000186.1 41 KIHKAEREKLKRDQLNDLFLELGNLLESD----RQNSGKASILGDTTRILRDL 89 567889**********************7....35555777887777777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.93E-5	37	94	No hit	No description
SuperFamily	SSF47459	1.03E-11	38	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.211	39	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-8	40	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0012	45	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MLDSSQSTVS ENPTSTANSV TEKSTDGSPP NRKCQGKVPK KIHKAEREKL KRDQLNDLFL 60 ELGNLLESDR QNSGKASILG DTTRILRDLL SQVECLRKEN AALQTESRYV TTEKNELKDE 120 NTALQTQITE LQNELQARMG YDHPVWTNRT DSLSRLATPH PAISIQPPHH HNRHHPQPLA 180 QPPPAVIGLV CPTPPRELQL FPVSEPAREE GEAPSNVRRP HARYPASLDS WPGQLLHTSL 240 VVTRTPDEQC SSSGLTLTTN TLEENPR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM661326	1e-162	KM661326.1 Ananas bracteatus clone 43135 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020099857.1	0.0	transcription factor bHLH47-like
Refseq	XP_020099858.1	0.0	transcription factor bHLH47-like
Swissprot	Q69V10	6e-59	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	A0A199W5T3	0.0	A0A199W5T3_ANACO; Transcription factor bHLH47
STRING	XP_008780656.1	9e-75	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	3e-32	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco000186.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]