PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000178.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 296aa    MW: 33557.7 Da    PI: 6.4371
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000178.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.32.2e-1787140356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ eq+++Le+ Fe  +++  e++ +LAk l+L+ rqV +WFqNrRa++k
  Aco000178.1  87 KKRRLNIEQVRTLEKNFELGNKLEPERKMQLAKALQLQPRQVAIWFQNRRARWK 140
                  4557899**********************************************9 PP
2HD-ZIP_I/II126.98.5e-4186176191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ eqv++LE++Fe  +kLeperK++la++L+lqprqva+WFqnrRAR+ktkqlEkdy++Lkr+++a+k+en++L++++++L++e+
  Aco000178.1  86 EKKRRLNIEQVRTLEKNFELGNKLEPERKMQLAKALQLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFEAIKSENDALQTQNKKLQAEI 176
                  69**************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-1867143IPR009057Homeodomain-like
SuperFamilySSF466892.69E-1972144IPR009057Homeodomain-like
PROSITE profilePS5007117.03882142IPR001356Homeobox domain
SMARTSM003894.1E-1685146IPR001356Homeobox domain
CDDcd000861.59E-1487143No hitNo description
PfamPF000461.1E-1487140IPR001356Homeobox domain
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PfamPF021836.3E-16142182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MACNGMASSS SSFPPNFILQ IQTPHEDEHH HHHPPNPFNP LLPSNLQDFR GMVPMMGKRS  60
MSFHGMDAAG GAGEDELSDD CSQAGEKKRR LNIEQVRTLE KNFELGNKLE PERKMQLAKA  120
LQLQPRQVAI WFQNRRARWK TKQLEKDYDV LKRQFEAIKS ENDALQTQNK KLQAEILSLK  180
GRETSELINL NKETEGSCSN RSENSSEINL DISRTSAAIE SPLNPHQTLP FYPSMRPADI  240
NQLLQNPSQP PPPPPPENQC PKIEHVIADG NFSNLLCSME EQPPFWPWAD HNNFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099478.10.0homeobox-leucine zipper protein HOX21-like
SwissprotA2XD081e-104HOX21_ORYSI; Homeobox-leucine zipper protein HOX21
TrEMBLA0A199W6I81e-178A0A199W6I8_ANACO; Homeobox-leucine zipper protein HOX21
STRINGXP_008797128.11e-157(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.15e-83HD-ZIP family protein