PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000059.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 316aa    MW: 33745.4 Da    PI: 4.6566
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000059.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-202069255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+GVr++  +g+WvAeIr+p++   r+r++lg+f taeeAa a+++a+++l+g
  Aco000059.1 20 EYRGVRQRT-WGKWVAEIREPRK---RTRIWLGSFATAEEAALAYDEAARRLYG 69
                 69****999.**********954...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.47E-291979No hitNo description
SuperFamilySSF541712.22E-212078IPR016177DNA-binding domain
PfamPF008478.8E-142069IPR001471AP2/ERF domain
SMARTSM003801.2E-352083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-302078IPR001471AP2/ERF domain
PROSITE profilePS5103222.6422077IPR001471AP2/ERF domain
PRINTSPR003671.8E-102132IPR001471AP2/ERF domain
PRINTSPR003671.8E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAYREGPARG KGGPQNAACE YRGVRQRTWG KWVAEIREPR KRTRIWLGSF ATAEEAALAY  60
DEAARRLYGP DAFLNLPHLR AAHPADFAPR PAQRFRFFPN SRSCAALVPP CGLLNLNAQH  120
NVNTIYQKLQ ELKNNPNSSP IHPPPPLPPP ITAATAVTAA TAAAAAATTT SLSASSNFTP  180
PSNNDGDDAQ IASGGEGERP QIDLREFLQQ LGVIGAEGEE RAGLSSGTAQ PSGTAVESGG  240
GSGGMDSEMA LGGADVADEE SGGFNWDALE EMRALEDLYH DHPAVLMREE SGHEMLQVDD  300
MHEELSLLPI SIWDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-172177663ATERF1
3gcc_A9e-172177663ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0904842e-81AC090484.4 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence.
GenBankAP0149592e-81AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020100340.10.0dehydration-responsive element-binding protein 2E
TrEMBLA0A199VRQ70.0A0A199VRQ7_ANACO; Dehydration-responsive element-binding protein 2E
STRINGXP_008809802.15e-87(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-46ERF family protein