PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn390081
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 314aa    MW: 34750.9 Da    PI: 6.778
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn390081genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-175099255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                +y+GV++++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Achn390081 50 RYRGVWRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 99
                69***9999.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-3050113IPR001471AP2/ERF domain
CDDcd000186.88E-2950108No hitNo description
SuperFamilySSF541717.19E-2150108IPR016177DNA-binding domain
PROSITE profilePS5103221.50950107IPR001471AP2/ERF domain
PfamPF008471.9E-105099IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-2850107IPR001471AP2/ERF domain
PRINTSPR003672.5E-85162IPR001471AP2/ERF domain
PRINTSPR003672.5E-87389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEEALRMLND SLIHQPEPDP FLQPLKRVTT AANKRSLRDG GEGGCGTQLR YRGVWRRPWG  60
RYAAEIRDPQ SKERRWLGTF DTAEEAACAY DCAARAMRGV KARTNFAYPT VTTLPPPPSL  120
TDNFLSRFHC KKPSQTSVRD IPAPTRSFVS SLSSPHGNFP MPTPQRSTSL NTLLLSNLFK  180
PSLTCEQLPN VSPSTSVCGN AYENYPGSNQ IRPETEYHNP EPSGSGLLQE VLNGFYPKPA  240
SKGDELSVTQ NQNCTNEAFN EMMGIESDHF GLHFDGFGSP AVAHSSISVP EESMLCEHVF  300
QFHELVSARP FQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1840106471Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028114602.11e-75ethylene-responsive transcription factor ESR2-like
TrEMBLA0A2R6QR680.0A0A2R6QR68_ACTCH; Ethylene-responsive transcription factor (Fragment)
STRINGcassava4.1_026470m1e-51(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-27DORNROSCHEN-like