PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn388061

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bZIP

Protein Properties

Length: 365aa MW: 41080.4 Da PI: 6.6868

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn388061	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.3	1e-10	76	114	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLe 39 k++rr+++NReAAr+sR+RKka++++Le+ k ++Le Achn388061 76 EKVQRRLAQNREAARKSRLRKKAYVQQLETyrlKLAQLE 114 699*************************98333444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.6E-8	71	121	No hit	No description
SMART	SM00338	4.7E-8	73	155	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.117	75	117	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.64E-7	77	117	No hit	No description
Pfam	PF00170	9.7E-8	77	112	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.8E-28	165	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MSSTSTQFAT SARMGMYDPI HQVSMWESMF RGDIIPNSDA SVPVQIDASL GNKAEYASYD 60 SLDPSENHPE ANKMSEKVQR RLAQNREAAR KSRLRKKAYV QQLETYRLKL AQLEQELTRA 120 RQQGVFIGGA IDTGHLGFSG PVNTGIATFE MEYAHWVEEQ QRHNCELRKV LQAHISDIEL 180 RILVENGLNH YDNLFRMKAE AAKADAFYLI SGTWRTSVEG FFLWLGGFRP SELLNVLMPQ 240 IEPLTDQQHM AVTNLRQSSQ QAEDALSQGI DQLQQTLAQS IAADPTGLGN YGSPMASAIE 300 KLDTLENFVS QADHLRQQTL HQLSRILTIR QTARGLLALG EYFQRLRALS LLWASRPREP 360 AYNI*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MSSTSTQFAT SARMGMYDPI HQVSMWESMF RGDIIPNSDA SVPVQIDASL GNKAEYASYD  60
SLDPSENHPE ANKMSEKVQR RLAQNREAAR KSRLRKKAYV QQLETYRLKL AQLEQELTRA  120
RQQGVFIGGA IDTGHLGFSG PVNTGIATFE MEYAHWVEEQ QRHNCELRKV LQAHISDIEL  180
RILVENGLNH YDNLFRMKAE AAKADAFYLI SGTWRTSVEG FFLWLGGFRP SELLNVLMPQ  240
IEPLTDQQHM AVTNLRQSSQ QAEDALSQGI DQLQQTLAQS IAADPTGLGN YGSPMASAIE  300
KLDTLENFVS QADHLRQQTL HQLSRILTIR QTARGLLALG EYFQRLRALS LLWASRPREP  360
AYNI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028127608.1	0.0	transcription factor TGA1-like
Refseq	XP_028127609.1	0.0	transcription factor TGA1-like
Refseq	XP_028127610.1	0.0	transcription factor TGA1-like
Refseq	XP_028127611.1	0.0	transcription factor TGA1-like
Refseq	XP_028127612.1	0.0	transcription factor TGA1-like
Swissprot	Q39162	1e-151	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A2R6R2R4	0.0	A0A2R6R2R4_ACTCH; Transcription factor like
STRING	VIT_18s0001g04470.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-144	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]