PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn386461

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

CAMTA

Protein Properties

Length: 927aa MW: 105229 Da PI: 8.6528

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn386461	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	91.7	6.6e-29	64	140	3	78
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggv 78 +e k+rwl+++ei+a+L n++ ++++ ++ t pksg+++L++rkk+r+frkDG++w kkkdgktv+E+he+LK v Achn386461 64 EEaKARWLRPNEIHAMLCNYKYFSIHVKPMTLPKSGTILLFDRKKLRNFRKDGHKWTKKKDGKTVKEAHEHLKCRLV 140 45599********************************************************************8755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	39.543	59	205	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.5E-25	62	153	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.3E-24	65	138	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.21E-10	346	446	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.24E-17	543	666	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	7.2E-17	544	658	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.64E-15	544	654	No hit	No description
PROSITE profile	PS50297	15.486	562	666	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.2E-6	578	658	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.007	595	627	IPR002110	Ankyrin repeat
SMART	SM00248	1.2E-5	595	624	IPR002110	Ankyrin repeat
SMART	SM00248	750	634	664	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.071	743	769	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	17	758	780	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.888	759	788	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.071	781	803	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.45	782	806	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.001	784	803	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	861	883	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.242	863	891	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence Send to blast
MDECGQQELH GKSSIDKRDE RERDQWKVLT KSFIDWLVLT VCHVHGSLWF LVKWTDLDVG 60 NIMEEAKARW LRPNEIHAML CNYKYFSIHV KPMTLPKSGT ILLFDRKKLR NFRKDGHKWT 120 KKKDGKTVKE AHEHLKCRLV MKKGSMYTML MVKRTRPLFA DATGCLIKPG DGITFQSHEM 180 RLHEINTLEW EELLVPDDPS KLSAPDGGKT SCSEQQNQYE INGFTSNGNI PSTNKISAQN 240 SFGSFYEPDA HCSSNCFNIT DNPSFQNAQG QTNPGLGTGE SLDILGKDGL QTQESLGRWM 300 NYFMTDSPGS VDDPILESSI STGHNLSMSP MMDDFRSAAP GQVFRITDVS PPWAFSNEET 360 KVLSFVTVEI LFRHLILITG FFYEGHPHLT KSNIYCVCGD VRSPVEIVQS GVFRCFVSPH 420 NPGLVNVYLS FDGSNPISQV LTFEYRAPLA CDWTISSEDK SSWEEFRVQM RLAHLLFSMS 480 KSLSILSSKV APTALKEAKM FARKTAHIAD GWAFMIESIE NNKISFQQAK DSLFELTLKN 540 RLYEYLLEKV VEGCKTPEHD DQGQGVIHLC AILDYTWAVY PFAWSGLSLD YRDKFGWTAL 600 HWAAYCGREK MVTALLSAGA KPNLVTDPNS ENPGGCTAAD LASKNGYDGL AAYLAEKGLV 660 EHFKDMTIAG NVSGSLQTGP PDAVHHGNLT EEELYLKDTL AAYRTAADAA ARIQTAFREH 720 SLKLRTEAVQ FSNPEDEARN IVAAMKIQHA FRNYETRKQI AAAAQIQHRF RTWKIRKDFI 780 SMRRHTIKIQ AIFRGFQVRK QYRKIVWSVG VLEKVILRWR MKRRGFRGLQ VSPIEAVNDQ 840 KQESDTEEDF FRDSRKQAED RVERSVVRVQ AMFRSKKAQQ EYRRMKLAYN QAQSIGFTLL 900 IVLVAIRMTS AKSLRSSLMV DRLHSP*

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence Send to blast

MDECGQQELH GKSSIDKRDE RERDQWKVLT KSFIDWLVLT VCHVHGSLWF LVKWTDLDVG  60
NIMEEAKARW LRPNEIHAML CNYKYFSIHV KPMTLPKSGT ILLFDRKKLR NFRKDGHKWT  120
KKKDGKTVKE AHEHLKCRLV MKKGSMYTML MVKRTRPLFA DATGCLIKPG DGITFQSHEM  180
RLHEINTLEW EELLVPDDPS KLSAPDGGKT SCSEQQNQYE INGFTSNGNI PSTNKISAQN  240
SFGSFYEPDA HCSSNCFNIT DNPSFQNAQG QTNPGLGTGE SLDILGKDGL QTQESLGRWM  300
NYFMTDSPGS VDDPILESSI STGHNLSMSP MMDDFRSAAP GQVFRITDVS PPWAFSNEET  360
KVLSFVTVEI LFRHLILITG FFYEGHPHLT KSNIYCVCGD VRSPVEIVQS GVFRCFVSPH  420
NPGLVNVYLS FDGSNPISQV LTFEYRAPLA CDWTISSEDK SSWEEFRVQM RLAHLLFSMS  480
KSLSILSSKV APTALKEAKM FARKTAHIAD GWAFMIESIE NNKISFQQAK DSLFELTLKN  540
RLYEYLLEKV VEGCKTPEHD DQGQGVIHLC AILDYTWAVY PFAWSGLSLD YRDKFGWTAL  600
HWAAYCGREK MVTALLSAGA KPNLVTDPNS ENPGGCTAAD LASKNGYDGL AAYLAEKGLV  660
EHFKDMTIAG NVSGSLQTGP PDAVHHGNLT EEELYLKDTL AAYRTAADAA ARIQTAFREH  720
SLKLRTEAVQ FSNPEDEARN IVAAMKIQHA FRNYETRKQI AAAAQIQHRF RTWKIRKDFI  780
SMRRHTIKIQ AIFRGFQVRK QYRKIVWSVG VLEKVILRWR MKRRGFRGLQ VSPIEAVNDQ  840
KQESDTEEDF FRDSRKQAED RVERSVVRVQ AMFRSKKAQQ EYRRMKLAYN QAQSIGFTLL  900
IVLVAIRMTS AKSLRSSLMV DRLHSP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028075463.1	0.0	calmodulin-binding transcription activator 5-like isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2R6P487	0.0	A0A2R6P487_ACTCH; Calmodulin-binding transcription activator 5 like
STRING	VIT_05s0077g01240.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]