PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn385361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HB-other | ||||||||
Protein Properties | Length: 1777aa MW: 199400 Da PI: 4.9822 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.6 | 9.2e-18 | 28 | 82 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ + yps++ r+eL+ +lgL++rq ++WF+ rR k++k Achn385361 28 KRKMKTASQLEILEKTYAVETYPSEALRAELSVQLGLSDRQLQMWFCHRRLKDRK 82 89999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-17 | 11 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.31E-15 | 21 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.422 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.4E-16 | 25 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.89E-13 | 26 | 83 | No hit | No description |
Pfam | PF00046 | 2.0E-15 | 28 | 82 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 17.031 | 563 | 622 | IPR018501 | DDT domain |
SMART | SM00571 | 1.5E-22 | 563 | 622 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.1E-16 | 565 | 619 | IPR018501 | DDT domain |
Pfam | PF05066 | 3.2E-14 | 745 | 813 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 1.6E-9 | 968 | 1012 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 3.3E-11 | 1153 | 1225 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1777 aa Download sequence Send to blast |
MEEGGSGGGG GGSDVEKKKK PEGESKVKRK MKTASQLEIL EKTYAVETYP SEALRAELSV 60 QLGLSDRQLQ MWFCHRRLKD RKTPPVKRQK KDFTVAPASS SGVGDEMVVG EVGNEHASGS 120 GSGSSPFGHV ESQHQRVAPR TGAAIARIAT DMPTVKRYYE PPQAISELRA IAFVEAQLGE 180 PLREDGPILG MEFDPLPPGA FGAPIMSVGQ QKPATRHYES NLYERTDAKP IKNAVRALHE 240 YQFLPEQPSV RNDSFERAAP SHYYGSPTDV PSARSALSTG RSYMHGNEQV PPAFGFQGQT 300 PSLGLLPHQG RQSHLLPSTS AEYDIVSRKT SIANIGTDAH FGTHPITALD NPFIPSERQV 360 TNDEDIARLE RKRKVCTQSE EARIAREVEA HEKRIRKELE KQDILRRKRE EQMRKEMERQ 420 DRERRKEEER LLREKQREEV RYQREQRREM ERREKFLQKE SIRAEKLRLK EELRREKDAA 480 RQKAASDRAT ARRIAKESME LIEDERLELM ELAASSKGLP SILSLDGETL QNLELFKDKL 540 IVFPPKSVNL KRPFAIKPWC DSEENTGNLF MVWRFLITFA DVLGLWPFTL DEFVQAFHDY 600 DPRLLGEIHI ALLRSIIKDI EDVARTPSTG LGTNQNYSAN PGGGHPQIVQ GAYAWGFDIR 660 SWQRHLNPLT WPEILRQFAL AAGYGPKLKK RSIEQAYIRD ENEGDGGEDV ISILRNGAAA 720 ENAVAIMQER GFSNPRRSRH RVTPGTVKFA AFHVLSLEGS DGLTILEVAD RIQKSGLRDL 780 TTSRTPEASI AAALSRDTKL FERTAPSTYC VRSPYRKDPA DAEAILSAAR EKIQIFKNGY 840 LDGEDAEDVE HDDVERDEDS ESDVAEDPEA DDLGTEMKPN NEALSCEANR FLTKTYPGDG 900 KEASHDEVMR TTQVGLKNLA GSSPLMQSEG YKGVKRTSAS VDQSVDVARI SNEAANLDQE 960 DTVIDESNSG EPWVQGLVEG EYSDLSVEER LNALVALIGV ANEGNSIRVV LEDRLEAANA 1020 LKKQMWAEVQ LDKRRMKEDY VMKMQYSSFI SCKSEPNIQF SSVEGRQSPL PAVDDKNVLA 1080 STNPVIQQEH IQDSQNDTNY CTPIPTERNQ SIQEFSAGTD NHPLLQTGFA AERSRSQLKA 1140 YIGHKAEEMY VYRSLPLGQD RRRNRYWQFI TSASRNDPGS GRIFVELRDG CWRLIDSEED 1200 FDALLESLDV RGSKESNLHS MLQKVEVYFK ETLRKNLVHT KTEWLTVDNI KNEVAEMASK 1260 PDCSGSTDSP TSTCCVSNSD LPEPSSSFAI DLGRNEAEKR DALKRYQDLE KWMWEECLNS 1320 SVLCAIKFGK KRCKQLLDIC DYCLDLYLSE DNYCPSCHRT SETSILDGNF SEHVAQWRKK 1380 FEAEAIQPDW SEAYRKSWGM KLHASSSAED LLQILTLLEG AINKDFLSSN FETTKELLGS 1440 CNRTESAANI SVNPEIIAVL PWVPQTSSAV TLRLMELDAS ISYMLHQKID SYKDKGAGDF 1500 FALPSKFALV KSIPEDDLIE TPHEGENLLQ EPWIDHGSVH SSSGRGRGAR GRGRGRTRGG 1560 RSQRQSISSR SVAAPRSTTT NNERFGQLLG WKGRSRGRGG RKRSRRTARS RQKPGKRVAD 1620 IGSERDQQKE IFFDNTVRSL GPQWNREETM EIQVEAAENA SSSERSEYDD YNGLAAGDEY 1680 DDLLPNDYSS VFNGKSDHLI PGVDYNVDGE EDDDDRVEGD DDVDDEEDDS NQDEHGDTDV 1740 ERYINDDSDD EGNQDGGEPI GNPDEATGST SSDFSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1546 | 1554 | RGARGRGRG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM457473 | 7e-45 | AM457473.2 Vitis vinifera contig VV78X112028.14, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028121396.1 | 0.0 | homeobox-DDT domain protein RLT2 isoform X1 | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A2R6QXE1 | 0.0 | A0A2R6QXE1_ACTCH; Homeobox-DDT domain protein | ||||
STRING | POPTR_0017s04760.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2142 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |