PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn384901
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 653aa    MW: 72349.9 Da    PI: 5.3372
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn384901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.8e-204499156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++ +++t++q+ee+e++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R+++k
  Achn384901 44 KKRYHRHTQHQIEEMEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMK 99
                688999***********************************************998 PP
2START181.83.8e-572264191180
                 HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
       START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                 ela +a++el ++a+ +ep+W         +n+de+ q+f+++ +     +++ea+r+s+vv+m++++l e+l+d + qW+++++    +a+tlev+s+
  Achn384901 226 ELAVAAMEELTQMAQMGEPLWIPGIdstYLLNEDEYFQIFPRGIGskplgFRSEASRESAVVIMNHTNLIEILMDAN-QWSTMFTgvvsRAMTLEVLST 323
                 57899****************9877656679***********999********************************.********************* PP

                 T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
       START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                 g      galq+m+ae+ +lsp+vp R+++fvRy++q  +g+w++vdvS+ds +++p    +vR++++pSg+li++++ng+skvtw+ehv++++r++++
  Achn384901 324 GvagnfnGALQVMTAEFHVLSPVVPtRESYFVRYCKQYVDGRWAVVDVSLDSLRPNP----LVRCRRRPSGCLIQELPNGYSKVTWIEHVEVDDRVISS 418
                 *********************************************************....6**********************************987 PP

                 H CS
       START 180 l 180
                 +
  Achn384901 419 V 419
                 5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-222399IPR009057Homeodomain-like
SuperFamilySSF466894.6E-1930100IPR009057Homeodomain-like
PROSITE profilePS5007116.82741101IPR001356Homeobox domain
SMARTSM003891.4E-1842105IPR001356Homeobox domain
CDDcd000866.47E-194499No hitNo description
PfamPF000467.2E-184499IPR001356Homeobox domain
PROSITE patternPS0002707699IPR017970Homeobox, conserved site
PROSITE profilePS5084835.287217427IPR002913START domain
SuperFamilySSF559612.14E-30219415No hitNo description
CDDcd088758.15E-106221419No hitNo description
SMARTSM002343.8E-49226446IPR002913START domain
PfamPF018521.9E-47227419IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-5286413IPR023393START-like domain
SuperFamilySSF559614.23E-22420644No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MAHSSAECDV VGRVRDEEFD SKSGSENHEG GSGDEQDPYQ RPKKKRYHRH TQHQIEEMEA  60
FFKECPHPDD KQRKELSREL GLEPLQIKFW FQNKRTQMKM QHERHENTAL RNENEKLQSD  120
NMSYREALGN ASCPNCGDPT VLGEMSFDEQ HLRVENSRLR EEIDRISAIA AKYVGKPVAN  180
YPIVSPPITQ RSLEVENFGG ELYGAGDLLR SIGGPIEQAD KQMIVELAVA AMEELTQMAQ  240
MGEPLWIPGI DSTYLLNEDE YFQIFPRGIG SKPLGFRSEA SRESAVVIMN HTNLIEILMD  300
ANQWSTMFTG VVSRAMTLEV LSTGVAGNFN GALQVMTAEF HVLSPVVPTR ESYFVRYCKQ  360
YVDGRWAVVD VSLDSLRPNP LVRCRRRPSG CLIQELPNGY SKVTWIEHVE VDDRVISSVE  420
GKRSMLKLSE RMVMSFCEGV SASNAHTWTT LSGSGADDVR VMIRKSVDDP GRPPGIVLSA  480
ATSFWLPVPH KRVFEFFRDE HSRNEWDILS NGGMIQEMEH IAIGRETGHC VSLLRVNTVN  540
GNQNNMLILQ ESCTGQTGSY VIYAPVDIVA MNLVLGGGDP DYVPILPSGF SILPDGPNGE  600
GGSGGSLLTV AFQILVDSAP NAKLSLGSVA TVNNLIACSV ERIKAAVASK KS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028123594.10.0homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_028123595.10.0homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_028123596.10.0homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A2R6QTG60.0A0A2R6QTG6_ACTCH; Homeobox-leucine zipper protein
STRINGVIT_12s0059g02310.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2