PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn384621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 25214.7 Da PI: 5.9065 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.1 | 2.1e-15 | 129 | 191 | 33 | 97 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + +tl+ ++g++W v++ ++++s + l+kGW eFv++ L+egD++vF+l++ +e l+v++f Achn384621 129 GEFITLQVPKGEKWPVRCMWSNGSAK--LSKGWPEFVRDIMLDEGDVCVFELIKMEEIVLKVTIF 191 45699*************88888865..*************************988888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 6.2E-5 | 99 | 194 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-16 | 125 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.0E-15 | 125 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.82E-15 | 128 | 191 | No hit | No description |
Pfam | PF02362 | 1.9E-13 | 130 | 191 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.73 | 132 | 194 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MDSFEGRSCG NRCSIPCKEE AENDDKVEIF ENKVFDESLD QRKVGKSYDA SYVQYMGRNF 60 NGIELKSSHC TANGGNLRVG SILLSVERST RDMGIQCGYS ELTTSAYETR LPYLSQRPKI 120 SRKRKRGIGE FITLQVPKGE KWPVRCMWSN GSAKLSKGWP EFVRDIMLDE GDVCVFELIK 180 MEEIVLKVTI FHVIEDAEPL NQLPTKILFQ TSQLGNCYDL NG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-16 | 127 | 195 | 77 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-16 | 127 | 195 | 77 | 144 | B3 domain-containing transcription factor VRN1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028102014.1 | 7e-55 | B3 domain-containing transcription factor VRN1-like isoform X2 | ||||
TrEMBL | A0A2R6RHA8 | 2e-53 | A0A2R6RHA8_ACTCH; B3 domain-containing transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8557 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 3e-18 | related to vernalization1 1 |