PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn384451
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family E2F/DP
Protein Properties Length: 335aa    MW: 37641.1 Da    PI: 9.3757
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn384451genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP56.35.2e-1828821271
     E2F_TDP 12 kflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                +fl l++k + +++ l+++a++L    v  +rRRiYDi+NVLe+++++++++kn+++wkg
  Achn384451 28 SFLGLYNKDDVETIGLDDAATRL---GV--ERRRIYDIVNVLESVGVLARMAKNRYSWKG 82
                7999****999************...**..****************************98 PP
2E2F_TDP33.19e-111251812871
     E2F_TDP  28 nevakeLvsedvknkrRRiYDilNVLealnliek................kekneirwkg 71 
                 ++++k+    +   k+RR+YDi NVL+++n iek                ++k+++rw g
  Achn384451 125 SKASKTD---NSAAKVRRLYDISNVLSSMNFIEKpnlnlslngtqiqhpdTRKPAFRWLG 181
                 4444443...66789*******************99999999999999999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013728.4E-172482IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.1E-182883IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.44E-122880IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023198.2E-152882IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM013724.2E-4101181IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-10130182IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.1E-8130181IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.48E-5133159IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MARLERENWD GGLKICNVLT REWRSGESFL GLYNKDDVET IGLDDAATRL GVERRRIYDI  60
VNVLESVGVL ARMAKNRYSW KGFGGIPQAL EDLKASDDDE DEKVSISIAS SQDDKINPSS  120
VTSFSKASKT DNSAAKVRRL YDISNVLSSM NFIEKPNLNL SLNGTQIQHP DTRKPAFRWL  180
GIRGKFENGS ENAFVINESK KRVFGTEITN TSFKRSKAVL PNDGHSIQMT KTQLQVHVKC  240
EHVGNEVDKS NLQQDSRQSS KGYQFGPFSP VSVSRSGAPV KNNAKQVHDW ANLAATYRPE  300
YHNQALRDLF DHYVEAWKSW YSEVSGKKTI QLMS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051662.11e-145E2F transcription factor-like E2FE isoform X6
TrEMBLA0A2R6PE250.0A0A2R6PE25_ACTCH; E2F transcription factor-like
STRINGXP_010272100.11e-108(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.24e-70DP-E2F-like 1